Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SDC3O75056 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
SDC3O75056 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.02■□□□□ 0.32
SDC3O75056 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SDC3O75056 CEND1P1-201ENST00000451006 455 ntBASIC17.02■□□□□ 0.32
SDC3O75056 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.02■□□□□ 0.32
SDC3O75056 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.02■□□□□ 0.32
SDC3O75056 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.02■□□□□ 0.32
SDC3O75056 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.02■□□□□ 0.32
SDC3O75056 AL353135.1-201ENST00000606729 504 ntBASIC17.02■□□□□ 0.32
SDC3O75056 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
SDC3O75056 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SDC3O75056 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SDC3O75056 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
SDC3O75056 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
SDC3O75056 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.02■□□□□ 0.31
SDC3O75056 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.02■□□□□ 0.31
SDC3O75056 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
SDC3O75056 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
SDC3O75056 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SDC3O75056 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
SDC3O75056 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.01■□□□□ 0.31
SDC3O75056 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.01■□□□□ 0.31
SDC3O75056 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SDC3O75056 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SDC3O75056 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SDC3O75056 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SDC3O75056 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SDC3O75056 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SDC3O75056 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SDC3O75056 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SDC3O75056 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SDC3O75056 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.01■□□□□ 0.31
SDC3O75056 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.01■□□□□ 0.31
SDC3O75056 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SDC3O75056 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.01■□□□□ 0.31
SDC3O75056 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.01■□□□□ 0.31
SDC3O75056 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.01■□□□□ 0.31
SDC3O75056 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.01■□□□□ 0.31
SDC3O75056 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.01■□□□□ 0.31
SDC3O75056 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SDC3O75056 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SDC3O75056 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SDC3O75056 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SDC3O75056 PI4KAP1-204ENST00000612579 1703 ntBASIC17.01■□□□□ 0.31
SDC3O75056 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.01■□□□□ 0.31
SDC3O75056 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
SDC3O75056 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.01■□□□□ 0.31
SDC3O75056 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
SDC3O75056 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
SDC3O75056 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17■□□□□ 0.31
SDC3O75056 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SDC3O75056 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17■□□□□ 0.31
SDC3O75056 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17■□□□□ 0.31
SDC3O75056 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17■□□□□ 0.31
SDC3O75056 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
SDC3O75056 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SDC3O75056 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17■□□□□ 0.31
SDC3O75056 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
SDC3O75056 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17■□□□□ 0.31
SDC3O75056 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17■□□□□ 0.31
SDC3O75056 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SDC3O75056 AP002414.1-201ENST00000391405 1147 ntBASIC17■□□□□ 0.31
SDC3O75056 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
SDC3O75056 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SDC3O75056 AC002558.1-201ENST00000488906 803 ntBASIC17■□□□□ 0.31
SDC3O75056 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17■□□□□ 0.31
SDC3O75056 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17■□□□□ 0.31
SDC3O75056 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17■□□□□ 0.31
SDC3O75056 OR7E47P-204ENST00000575924 449 ntBASIC17■□□□□ 0.31
SDC3O75056 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17■□□□□ 0.31
SDC3O75056 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17■□□□□ 0.31
SDC3O75056 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17■□□□□ 0.31
SDC3O75056 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17■□□□□ 0.31
SDC3O75056 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
SDC3O75056 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17■□□□□ 0.31
SDC3O75056 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SDC3O75056 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
SDC3O75056 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SDC3O75056 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SDC3O75056 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.99■□□□□ 0.31
SDC3O75056 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
SDC3O75056 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.99■□□□□ 0.31
SDC3O75056 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.99■□□□□ 0.31
SDC3O75056 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.99■□□□□ 0.31
SDC3O75056 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
SDC3O75056 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.99■□□□□ 0.31
SDC3O75056 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
SDC3O75056 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
SDC3O75056 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SDC3O75056 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms