Protein–RNA interactions for Protein: Q9Y5F2

PCDHB11, Protocadherin beta-11, humanhuman

Predictions only

Length 797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11Q9Y5F2 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB11Q9Y5F2 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB11Q9Y5F2 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB11Q9Y5F2 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
PCDHB11Q9Y5F2 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB11Q9Y5F2 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB11Q9Y5F2 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB11Q9Y5F2 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB11Q9Y5F2 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
PCDHB11Q9Y5F2 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 AC007967.3-201ENST00000434308 558 ntBASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB11Q9Y5F2 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 AC010460.3-201ENST00000511359 1579 ntBASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 COX5BP2-201ENST00000392354 334 ntBASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 FAM220CP-201ENST00000395253 831 ntBASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 AC011467.2-201ENST00000598425 242 ntBASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
PCDHB11Q9Y5F2 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 BX842568.4-201ENST00000421222 227 ntBASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 AC018712.1-201ENST00000455767 687 ntBASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHB11Q9Y5F2 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms