Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 AD001527.2-201ENST00000622994 785 ntBASIC16.91■□□□□ 0.3
CUEDC1Q9NWM3 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.91■□□□□ 0.3
CUEDC1Q9NWM3 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CUEDC1Q9NWM3 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CUEDC1Q9NWM3 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CUEDC1Q9NWM3 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CUEDC1Q9NWM3 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.91■□□□□ 0.3
CUEDC1Q9NWM3 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.91■□□□□ 0.3
CUEDC1Q9NWM3 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.91■□□□□ 0.3
CUEDC1Q9NWM3 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.91■□□□□ 0.3
CUEDC1Q9NWM3 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CUEDC1Q9NWM3 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CUEDC1Q9NWM3 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.91■□□□□ 0.3
CUEDC1Q9NWM3 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CUEDC1Q9NWM3 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
CUEDC1Q9NWM3 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CUEDC1Q9NWM3 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 AP001269.4-201ENST00000609611 512 ntBASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 AL353593.2-201ENST00000602529 1483 ntBASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CUEDC1Q9NWM3 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.89■□□□□ 0.3
CUEDC1Q9NWM3 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CUEDC1Q9NWM3 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 LYSMD4-203ENST00000378904 2122 ntBASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 IGHV3-52-201ENST00000519770 353 ntBASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.89■□□□□ 0.29
CUEDC1Q9NWM3 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CUEDC1Q9NWM3 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms