Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 NPAP1P7-201ENST00000613027 823 ntBASIC18.04■□□□□ 0.48
PCDH9Q9HC56 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.04■□□□□ 0.48
PCDH9Q9HC56 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDH9Q9HC56 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDH9Q9HC56 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDH9Q9HC56 AC060834.1-201ENST00000443027 2032 ntBASIC18.04■□□□□ 0.48
PCDH9Q9HC56 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.04■□□□□ 0.48
PCDH9Q9HC56 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDH9Q9HC56 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDH9Q9HC56 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDH9Q9HC56 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDH9Q9HC56 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.04■□□□□ 0.48
PCDH9Q9HC56 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDH9Q9HC56 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
PCDH9Q9HC56 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDH9Q9HC56 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDH9Q9HC56 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PCDH9Q9HC56 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDH9Q9HC56 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDH9Q9HC56 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
PCDH9Q9HC56 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PCDH9Q9HC56 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 AC097374.2-201ENST00000618617 1306 ntBASIC18.03■□□□□ 0.48
PCDH9Q9HC56 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 ATP5G2P1-201ENST00000433580 426 ntBASIC18.03■□□□□ 0.48
PCDH9Q9HC56 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 TPSP2-201ENST00000561760 610 ntBASIC18.03■□□□□ 0.48
PCDH9Q9HC56 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDH9Q9HC56 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 COX5BP2-201ENST00000392354 334 ntBASIC18.02■□□□□ 0.48
PCDH9Q9HC56 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 VENTXP7-201ENST00000475503 772 ntBASIC18.02■□□□□ 0.48
PCDH9Q9HC56 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 MIR3180-1-201ENST00000580374 94 ntBASIC18.02■□□□□ 0.48
PCDH9Q9HC56 MIR3180-3-201ENST00000584616 94 ntBASIC18.02■□□□□ 0.48
PCDH9Q9HC56 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.02■□□□□ 0.48
PCDH9Q9HC56 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
PCDH9Q9HC56 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.02■□□□□ 0.47
PCDH9Q9HC56 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PCDH9Q9HC56 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.02■□□□□ 0.47
PCDH9Q9HC56 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
PCDH9Q9HC56 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
PCDH9Q9HC56 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PCDH9Q9HC56 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PCDH9Q9HC56 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms