Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 KRT8P23-201ENST00000560090 1207 ntBASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 AC027307.3-201ENST00000594262 1100 ntBASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.73■□□□□ 0.91
ZNF541Q9H0D2 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 CD81-202ENST00000381036 880 ntTSL 3 BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 HMGA1P7-201ENST00000406908 502 ntBASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 MIR4515-201ENST00000584082 81 ntBASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 AL161645.1-201ENST00000622716 1255 ntBASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF541Q9H0D2 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 PIN1P1-201ENST00000412108 996 ntBASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF541Q9H0D2 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.7■□□□□ 0.91
ZNF541Q9H0D2 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 AC046185.3-201ENST00000623228 1824 ntBASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF541Q9H0D2 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF541Q9H0D2 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms