Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPAP1Q9BWH6 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPAP1Q9BWH6 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC21.17■□□□□ 0.98
RPAP1Q9BWH6 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RPAP1Q9BWH6 IMP4-203ENST00000409935 958 ntTSL 5 BASIC21.17■□□□□ 0.98
RPAP1Q9BWH6 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC21.17■□□□□ 0.98
RPAP1Q9BWH6 AC103564.2-201ENST00000432853 1299 ntBASIC21.17■□□□□ 0.98
RPAP1Q9BWH6 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC21.17■□□□□ 0.98
RPAP1Q9BWH6 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC21.17■□□□□ 0.98
RPAP1Q9BWH6 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC21.17■□□□□ 0.98
RPAP1Q9BWH6 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC21.17■□□□□ 0.98
RPAP1Q9BWH6 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC21.17■□□□□ 0.98
RPAP1Q9BWH6 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RPAP1Q9BWH6 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC21.17■□□□□ 0.98
RPAP1Q9BWH6 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC21.17■□□□□ 0.98
RPAP1Q9BWH6 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC21.17■□□□□ 0.98
RPAP1Q9BWH6 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPAP1Q9BWH6 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RPAP1Q9BWH6 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 AP002414.3-201ENST00000589352 1468 ntBASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 ETFA-208ENST00000559602 792 ntTSL 3 BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 COX5A-202ENST00000562233 441 ntTSL 3 BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RPAP1Q9BWH6 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 CENPM-204ENST00000402420 688 ntTSL 5 BASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 UNC93B6-202ENST00000528242 690 ntBASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 AD001527.2-201ENST00000622994 785 ntBASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 AL022326.1-202ENST00000641533 845 ntBASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 PRORSD1P-202ENST00000563365 2154 ntBASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 BOC-212ENST00000485230 2173 ntTSL 2 BASIC21.15■□□□□ 0.98
RPAP1Q9BWH6 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
RPAP1Q9BWH6 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
RPAP1Q9BWH6 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RPAP1Q9BWH6 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RPAP1Q9BWH6 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC21.14■□□□□ 0.98
RPAP1Q9BWH6 ADM-208ENST00000534464 1640 ntTSL 2 BASIC21.14■□□□□ 0.98
RPAP1Q9BWH6 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RPAP1Q9BWH6 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
RPAP1Q9BWH6 AC005104.2-201ENST00000427818 678 ntBASIC21.14■□□□□ 0.98
RPAP1Q9BWH6 KRT18P3-201ENST00000451602 1288 ntBASIC21.14■□□□□ 0.98
RPAP1Q9BWH6 HS6ST1P1-201ENST00000481504 1234 ntBASIC21.14■□□□□ 0.98
RPAP1Q9BWH6 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC21.14■□□□□ 0.98
RPAP1Q9BWH6 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC21.14■□□□□ 0.98
RPAP1Q9BWH6 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC21.14■□□□□ 0.98
RPAP1Q9BWH6 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC21.14■□□□□ 0.98
RPAP1Q9BWH6 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC21.14■□□□□ 0.98
RPAP1Q9BWH6 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC21.14■□□□□ 0.98
RPAP1Q9BWH6 AC040169.1-201ENST00000565382 521 ntBASIC21.14■□□□□ 0.98
RPAP1Q9BWH6 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
RPAP1Q9BWH6 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC21.14■□□□□ 0.97
RPAP1Q9BWH6 AIRN-201ENST00000601203 4374 ntBASIC21.14■□□□□ 0.97
RPAP1Q9BWH6 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RPAP1Q9BWH6 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC21.14■□□□□ 0.97
RPAP1Q9BWH6 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RPAP1Q9BWH6 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC21.14■□□□□ 0.97
RPAP1Q9BWH6 AC009053.2-201ENST00000563701 2365 ntBASIC21.14■□□□□ 0.97
RPAP1Q9BWH6 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RPAP1Q9BWH6 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RPAP1Q9BWH6 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms