Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 AC079602.3-201ENST00000623931 403 ntBASIC15.28■□□□□ 0.04
NKX3-1Q99801 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC15.28■□□□□ 0.04
NKX3-1Q99801 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NKX3-1Q99801 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC15.27■□□□□ 0.04
NKX3-1Q99801 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.27■□□□□ 0.04
NKX3-1Q99801 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
NKX3-1Q99801 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
NKX3-1Q99801 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
NKX3-1Q99801 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NKX3-1Q99801 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
NKX3-1Q99801 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
NKX3-1Q99801 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
NKX3-1Q99801 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
NKX3-1Q99801 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NKX3-1Q99801 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC15.27■□□□□ 0.04
NKX3-1Q99801 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NKX3-1Q99801 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC15.27■□□□□ 0.04
NKX3-1Q99801 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC15.27■□□□□ 0.04
NKX3-1Q99801 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC15.27■□□□□ 0.04
NKX3-1Q99801 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC15.27■□□□□ 0.04
NKX3-1Q99801 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
NKX3-1Q99801 AL049597.2-201ENST00000565575 961 ntBASIC15.27■□□□□ 0.04
NKX3-1Q99801 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
NKX3-1Q99801 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.04
NKX3-1Q99801 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
NKX3-1Q99801 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
NKX3-1Q99801 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
NKX3-1Q99801 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
NKX3-1Q99801 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
NKX3-1Q99801 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
NKX3-1Q99801 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
NKX3-1Q99801 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
NKX3-1Q99801 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
NKX3-1Q99801 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
NKX3-1Q99801 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
NKX3-1Q99801 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
NKX3-1Q99801 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
NKX3-1Q99801 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
NKX3-1Q99801 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX3-1Q99801 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC15.26■□□□□ 0.03
NKX3-1Q99801 LYSMD4-203ENST00000378904 2122 ntBASIC15.26■□□□□ 0.03
NKX3-1Q99801 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
NKX3-1Q99801 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NKX3-1Q99801 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC15.26■□□□□ 0.03
NKX3-1Q99801 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC15.26■□□□□ 0.03
NKX3-1Q99801 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC15.26■□□□□ 0.03
NKX3-1Q99801 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX3-1Q99801 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
NKX3-1Q99801 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NKX3-1Q99801 AC005915.1-201ENST00000624912 2018 ntBASIC15.26■□□□□ 0.03
NKX3-1Q99801 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX3-1Q99801 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX3-1Q99801 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC15.26■□□□□ 0.03
NKX3-1Q99801 TERF1P1-201ENST00000311003 1181 ntBASIC15.26■□□□□ 0.03
NKX3-1Q99801 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
NKX3-1Q99801 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC15.26■□□□□ 0.03
NKX3-1Q99801 HMGA1P5-201ENST00000412453 271 ntBASIC15.26■□□□□ 0.03
NKX3-1Q99801 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC15.26■□□□□ 0.03
NKX3-1Q99801 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC15.26■□□□□ 0.03
NKX3-1Q99801 P4HB-223ENST00000576390 439 ntTSL 4 BASIC15.26■□□□□ 0.03
NKX3-1Q99801 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC15.26■□□□□ 0.03
NKX3-1Q99801 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX3-1Q99801 AC105020.1-201ENST00000435356 2205 ntBASIC15.26■□□□□ 0.03
NKX3-1Q99801 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX3-1Q99801 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NKX3-1Q99801 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NKX3-1Q99801 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NKX3-1Q99801 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NKX3-1Q99801 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX3-1Q99801 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX3-1Q99801 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX3-1Q99801 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
NKX3-1Q99801 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX3-1Q99801 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC15.26■□□□□ 0.03
NKX3-1Q99801 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX3-1Q99801 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC15.26■□□□□ 0.03
NKX3-1Q99801 MED29-202ENST00000594368 1471 ntTSL 2 BASIC15.26■□□□□ 0.03
NKX3-1Q99801 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NKX3-1Q99801 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms