Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 AL353593.2-201ENST00000602529 1483 ntBASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 FGFR3P6-201ENST00000457012 610 ntBASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 AC002558.1-201ENST00000488906 803 ntBASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 AC104692.2-201ENST00000603054 253 ntBASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD1Q96NR3 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 AC026396.1-201ENST00000419388 421 ntBASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 FAM197Y8-203ENST00000450145 560 ntBASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 LINC01451-201ENST00000623792 534 ntBASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 AL356309.3-201ENST00000624132 1934 ntBASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.48■□□□□ 0.23
PTCHD1Q96NR3 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 AC005104.2-201ENST00000427818 678 ntBASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms