Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.7■□□□□ 0.42
CHFRQ96EP1 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHFRQ96EP1 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHFRQ96EP1 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHFRQ96EP1 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHFRQ96EP1 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHFRQ96EP1 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.7■□□□□ 0.42
CHFRQ96EP1 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CHFRQ96EP1 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.7■□□□□ 0.42
CHFRQ96EP1 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CHFRQ96EP1 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHFRQ96EP1 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CHFRQ96EP1 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHFRQ96EP1 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHFRQ96EP1 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHFRQ96EP1 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CHFRQ96EP1 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.69■□□□□ 0.42
CHFRQ96EP1 AC092919.2-201ENST00000623631 1645 ntBASIC17.69■□□□□ 0.42
CHFRQ96EP1 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.69■□□□□ 0.42
CHFRQ96EP1 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.69■□□□□ 0.42
CHFRQ96EP1 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.69■□□□□ 0.42
CHFRQ96EP1 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHFRQ96EP1 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHFRQ96EP1 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.69■□□□□ 0.42
CHFRQ96EP1 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHFRQ96EP1 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CHFRQ96EP1 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC17.69■□□□□ 0.42
CHFRQ96EP1 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CHFRQ96EP1 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.69■□□□□ 0.42
CHFRQ96EP1 AC104581.1-202ENST00000635932 2618 ntBASIC17.69■□□□□ 0.42
CHFRQ96EP1 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CHFRQ96EP1 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHFRQ96EP1 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHFRQ96EP1 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHFRQ96EP1 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CHFRQ96EP1 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHFRQ96EP1 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CHFRQ96EP1 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
CHFRQ96EP1 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.69■□□□□ 0.42
CHFRQ96EP1 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CHFRQ96EP1 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CHFRQ96EP1 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CHFRQ96EP1 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.69■□□□□ 0.42
CHFRQ96EP1 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.68■□□□□ 0.42
CHFRQ96EP1 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHFRQ96EP1 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CHFRQ96EP1 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHFRQ96EP1 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHFRQ96EP1 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
CHFRQ96EP1 AL135999.2-201ENST00000622438 1686 ntBASIC17.68■□□□□ 0.42
CHFRQ96EP1 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHFRQ96EP1 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHFRQ96EP1 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
CHFRQ96EP1 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.68■□□□□ 0.42
CHFRQ96EP1 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHFRQ96EP1 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHFRQ96EP1 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.68■□□□□ 0.42
CHFRQ96EP1 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CHFRQ96EP1 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHFRQ96EP1 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
CHFRQ96EP1 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CHFRQ96EP1 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.68■□□□□ 0.42
CHFRQ96EP1 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.68■□□□□ 0.42
CHFRQ96EP1 AL645939.2-201ENST00000427340 991 ntBASIC17.68■□□□□ 0.42
CHFRQ96EP1 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.68■□□□□ 0.42
CHFRQ96EP1 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.68■□□□□ 0.42
CHFRQ96EP1 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.68■□□□□ 0.42
CHFRQ96EP1 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
CHFRQ96EP1 CXCL1P1-201ENST00000502804 216 ntBASIC17.68■□□□□ 0.42
CHFRQ96EP1 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHFRQ96EP1 AC023141.13-201ENST00000604991 943 ntBASIC17.68■□□□□ 0.42
CHFRQ96EP1 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CHFRQ96EP1 ACTL9-202ENST00000612068 1252 ntBASIC17.68■□□□□ 0.42
CHFRQ96EP1 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHFRQ96EP1 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHFRQ96EP1 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHFRQ96EP1 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.68■□□□□ 0.42
CHFRQ96EP1 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHFRQ96EP1 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHFRQ96EP1 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
CHFRQ96EP1 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.68■□□□□ 0.42
CHFRQ96EP1 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CHFRQ96EP1 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHFRQ96EP1 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CHFRQ96EP1 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHFRQ96EP1 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHFRQ96EP1 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.67■□□□□ 0.42
CHFRQ96EP1 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CHFRQ96EP1 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
CHFRQ96EP1 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHFRQ96EP1 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CHFRQ96EP1 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CHFRQ96EP1 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.67■□□□□ 0.42
CHFRQ96EP1 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CHFRQ96EP1 PAWRP1-201ENST00000451083 565 ntBASIC17.67■□□□□ 0.42
CHFRQ96EP1 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.67■□□□□ 0.42
CHFRQ96EP1 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.67■□□□□ 0.42
CHFRQ96EP1 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.67■□□□□ 0.42
CHFRQ96EP1 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CHFRQ96EP1 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms