Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 AD001527.2-201ENST00000622994 785 ntBASIC20.56■□□□□ 0.88
BRF1Q92994 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
BRF1Q92994 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.56■□□□□ 0.88
BRF1Q92994 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC20.56■□□□□ 0.88
BRF1Q92994 PRORSD1P-202ENST00000563365 2154 ntBASIC20.56■□□□□ 0.88
BRF1Q92994 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
BRF1Q92994 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
BRF1Q92994 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
BRF1Q92994 AC022211.2-201ENST00000585075 2527 ntBASIC20.56■□□□□ 0.88
BRF1Q92994 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
BRF1Q92994 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
BRF1Q92994 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.56■□□□□ 0.88
BRF1Q92994 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
BRF1Q92994 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BRF1Q92994 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BRF1Q92994 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
BRF1Q92994 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
BRF1Q92994 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
BRF1Q92994 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
BRF1Q92994 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BRF1Q92994 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
BRF1Q92994 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC20.55■□□□□ 0.88
BRF1Q92994 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BRF1Q92994 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BRF1Q92994 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BRF1Q92994 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC20.55■□□□□ 0.88
BRF1Q92994 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
BRF1Q92994 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
BRF1Q92994 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.55■□□□□ 0.88
BRF1Q92994 CCNC-219ENST00000627680 896 ntTSL 5 BASIC20.55■□□□□ 0.88
BRF1Q92994 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC20.55■□□□□ 0.88
BRF1Q92994 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
BRF1Q92994 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
BRF1Q92994 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
BRF1Q92994 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
BRF1Q92994 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.55■□□□□ 0.88
BRF1Q92994 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.55■□□□□ 0.88
BRF1Q92994 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC20.55■□□□□ 0.88
BRF1Q92994 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
BRF1Q92994 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BRF1Q92994 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BRF1Q92994 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
BRF1Q92994 AC116353.5-201ENST00000638148 1699 ntBASIC20.54■□□□□ 0.88
BRF1Q92994 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
BRF1Q92994 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
BRF1Q92994 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC20.54■□□□□ 0.88
BRF1Q92994 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC20.54■□□□□ 0.88
BRF1Q92994 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BRF1Q92994 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BRF1Q92994 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20.54■□□□□ 0.88
BRF1Q92994 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BRF1Q92994 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BRF1Q92994 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC20.54■□□□□ 0.88
BRF1Q92994 NUS1P2-201ENST00000417358 873 ntBASIC20.54■□□□□ 0.88
BRF1Q92994 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
BRF1Q92994 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.54■□□□□ 0.88
BRF1Q92994 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC20.54■□□□□ 0.88
BRF1Q92994 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC20.54■□□□□ 0.88
BRF1Q92994 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC20.54■□□□□ 0.88
BRF1Q92994 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC20.54■□□□□ 0.88
BRF1Q92994 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
BRF1Q92994 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
BRF1Q92994 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
BRF1Q92994 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC20.54■□□□□ 0.88
BRF1Q92994 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
BRF1Q92994 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BRF1Q92994 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
BRF1Q92994 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
BRF1Q92994 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
BRF1Q92994 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BRF1Q92994 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
BRF1Q92994 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC20.54■□□□□ 0.88
BRF1Q92994 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRF1Q92994 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
BRF1Q92994 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
BRF1Q92994 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRF1Q92994 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRF1Q92994 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRF1Q92994 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRF1Q92994 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.53■□□□□ 0.88
BRF1Q92994 FUOM-202ENST00000368551 628 ntTSL 3 BASIC20.53■□□□□ 0.88
BRF1Q92994 POM121L3P-201ENST00000419331 1163 ntBASIC20.53■□□□□ 0.88
BRF1Q92994 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
BRF1Q92994 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRF1Q92994 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC20.53■□□□□ 0.88
BRF1Q92994 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC20.53■□□□□ 0.88
BRF1Q92994 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRF1Q92994 AC138894.3-201ENST00000603787 634 ntBASIC20.53■□□□□ 0.88
BRF1Q92994 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRF1Q92994 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRF1Q92994 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRF1Q92994 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRF1Q92994 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRF1Q92994 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRF1Q92994 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
BRF1Q92994 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRF1Q92994 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
BRF1Q92994 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
BRF1Q92994 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRF1Q92994 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms