Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 AL645939.2-201ENST00000427340 991 ntBASIC17.46■□□□□ 0.39
HMGB4Q8WW32 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 AC074386.1-202ENST00000463561 864 ntBASIC17.46■□□□□ 0.39
HMGB4Q8WW32 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 AC023141.13-201ENST00000604991 943 ntBASIC17.46■□□□□ 0.39
HMGB4Q8WW32 AC106028.4-201ENST00000614509 607 ntBASIC17.46■□□□□ 0.39
HMGB4Q8WW32 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 AC007064.4-201ENST00000637740 555 ntBASIC17.46■□□□□ 0.39
HMGB4Q8WW32 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB4Q8WW32 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
HMGB4Q8WW32 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
HMGB4Q8WW32 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
HMGB4Q8WW32 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
HMGB4Q8WW32 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.46■□□□□ 0.38
HMGB4Q8WW32 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
HMGB4Q8WW32 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.38
HMGB4Q8WW32 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 TNXA-203ENST00000507684 2038 ntBASIC17.45■□□□□ 0.38
HMGB4Q8WW32 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 RHOQP3-201ENST00000437982 621 ntBASIC17.45■□□□□ 0.38
HMGB4Q8WW32 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB4Q8WW32 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 AC091812.2-201ENST00000619081 385 ntBASIC17.44■□□□□ 0.38
HMGB4Q8WW32 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB4Q8WW32 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms