Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 AC060834.1-201ENST00000443027 2032 ntBASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 AC005104.2-201ENST00000427818 678 ntBASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.79■□□□□ 0.28
CLHC1Q8NHS4 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.78■□□□□ 0.28
CLHC1Q8NHS4 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLHC1Q8NHS4 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
CLHC1Q8NHS4 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLHC1Q8NHS4 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.77■□□□□ 0.28
CLHC1Q8NHS4 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CLHC1Q8NHS4 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CLHC1Q8NHS4 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLHC1Q8NHS4 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLHC1Q8NHS4 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.77■□□□□ 0.28
CLHC1Q8NHS4 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLHC1Q8NHS4 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
CLHC1Q8NHS4 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLHC1Q8NHS4 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
CLHC1Q8NHS4 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CLHC1Q8NHS4 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLHC1Q8NHS4 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms