Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC20.73■□□□□ 0.91
CTR9Q6PD62 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CTR9Q6PD62 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTR9Q6PD62 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CTR9Q6PD62 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTR9Q6PD62 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTR9Q6PD62 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CTR9Q6PD62 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTR9Q6PD62 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTR9Q6PD62 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTR9Q6PD62 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.72■□□□□ 0.91
CTR9Q6PD62 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC20.72■□□□□ 0.91
CTR9Q6PD62 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC20.72■□□□□ 0.91
CTR9Q6PD62 CD63-204ENST00000546939 779 ntTSL 3 BASIC20.72■□□□□ 0.91
CTR9Q6PD62 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC20.72■□□□□ 0.91
CTR9Q6PD62 AL139327.4-201ENST00000612362 153 ntBASIC20.72■□□□□ 0.91
CTR9Q6PD62 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CTR9Q6PD62 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTR9Q6PD62 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
CTR9Q6PD62 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTR9Q6PD62 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CTR9Q6PD62 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CTR9Q6PD62 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTR9Q6PD62 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTR9Q6PD62 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CTR9Q6PD62 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CTR9Q6PD62 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.72■□□□□ 0.91
CTR9Q6PD62 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTR9Q6PD62 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTR9Q6PD62 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CTR9Q6PD62 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTR9Q6PD62 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CTR9Q6PD62 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTR9Q6PD62 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
CTR9Q6PD62 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTR9Q6PD62 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTR9Q6PD62 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
CTR9Q6PD62 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTR9Q6PD62 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC20.71■□□□□ 0.91
CTR9Q6PD62 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTR9Q6PD62 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC20.71■□□□□ 0.91
CTR9Q6PD62 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CTR9Q6PD62 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC20.71■□□□□ 0.91
CTR9Q6PD62 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC20.71■□□□□ 0.91
CTR9Q6PD62 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTR9Q6PD62 AC106730.1-201ENST00000566722 1090 ntBASIC20.71■□□□□ 0.91
CTR9Q6PD62 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC20.71■□□□□ 0.91
CTR9Q6PD62 AC097637.2-201ENST00000624096 1997 ntBASIC20.71■□□□□ 0.91
CTR9Q6PD62 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTR9Q6PD62 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.71■□□□□ 0.91
CTR9Q6PD62 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
CTR9Q6PD62 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTR9Q6PD62 GATB-213ENST00000515812 1893 ntTSL 5 BASIC20.71■□□□□ 0.91
CTR9Q6PD62 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC20.71■□□□□ 0.91
CTR9Q6PD62 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CTR9Q6PD62 NCF1C-201ENST00000438382 1427 ntBASIC20.7■□□□□ 0.9
CTR9Q6PD62 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CTR9Q6PD62 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.7■□□□□ 0.9
CTR9Q6PD62 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTR9Q6PD62 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
CTR9Q6PD62 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC20.7■□□□□ 0.9
CTR9Q6PD62 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.7■□□□□ 0.9
CTR9Q6PD62 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.7■□□□□ 0.9
CTR9Q6PD62 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTR9Q6PD62 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CTR9Q6PD62 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC20.7■□□□□ 0.9
CTR9Q6PD62 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.7■□□□□ 0.9
CTR9Q6PD62 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC20.7■□□□□ 0.9
CTR9Q6PD62 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC20.7■□□□□ 0.9
CTR9Q6PD62 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC20.7■□□□□ 0.9
CTR9Q6PD62 TK1-204ENST00000590430 683 ntTSL 3 BASIC20.7■□□□□ 0.9
CTR9Q6PD62 AC006557.2-201ENST00000592985 1240 ntBASIC20.7■□□□□ 0.9
CTR9Q6PD62 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTR9Q6PD62 AL356488.2-201ENST00000602755 427 ntBASIC20.7■□□□□ 0.9
CTR9Q6PD62 AC117500.6-201ENST00000624871 588 ntBASIC20.7■□□□□ 0.9
CTR9Q6PD62 AC006504.4-201ENST00000592118 1568 ntBASIC20.7■□□□□ 0.9
CTR9Q6PD62 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTR9Q6PD62 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTR9Q6PD62 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTR9Q6PD62 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC20.7■□□□□ 0.9
CTR9Q6PD62 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTR9Q6PD62 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.7■□□□□ 0.9
CTR9Q6PD62 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC20.7■□□□□ 0.9
CTR9Q6PD62 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTR9Q6PD62 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTR9Q6PD62 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTR9Q6PD62 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTR9Q6PD62 AC046185.3-201ENST00000623228 1824 ntBASIC20.69■□□□□ 0.9
CTR9Q6PD62 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTR9Q6PD62 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTR9Q6PD62 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC20.69■□□□□ 0.9
CTR9Q6PD62 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTR9Q6PD62 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.69■□□□□ 0.9
CTR9Q6PD62 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTR9Q6PD62 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTR9Q6PD62 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CTR9Q6PD62 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
CTR9Q6PD62 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
CTR9Q6PD62 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTR9Q6PD62 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms