Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 AC069120.2-201ENST00000524091 540 ntBASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 CNN2P2-201ENST00000443536 909 ntBASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 CNN2P3-201ENST00000450201 906 ntBASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 AL136317.3-201ENST00000618497 906 ntBASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 AL355306.1-201ENST00000415580 579 ntBASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC88AQ3V6T2 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 GATB-205ENST00000508611 605 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 TUBB3P1-201ENST00000405796 1332 ntBASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 FO538757.1-201ENST00000623083 1397 ntBASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC88AQ3V6T2 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 COX5BP2-201ENST00000392354 334 ntBASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 BICD1-207ENST00000551848 1962 ntBASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 ACTL9-202ENST00000612068 1252 ntBASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 RPL30-202ENST00000396070 440 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 GOLGA6L11P-201ENST00000417252 1298 ntBASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 TSFM-210ENST00000550559 897 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 SPDYE22P-201ENST00000582158 798 ntBASIC21.15■□□□□ 0.98
CCDC88AQ3V6T2 BSG-214ENST00000614867 960 ntTSL 3 BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms