Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC10.67□□□□□ -0.7
HSPG2P98160 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC10.67□□□□□ -0.7
HSPG2P98160 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
HSPG2P98160 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC10.67□□□□□ -0.7
HSPG2P98160 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC10.67□□□□□ -0.7
HSPG2P98160 KRT223P-202ENST00000449164 1292 ntBASIC10.67□□□□□ -0.7
HSPG2P98160 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC10.67□□□□□ -0.7
HSPG2P98160 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC10.67□□□□□ -0.7
HSPG2P98160 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC10.67□□□□□ -0.7
HSPG2P98160 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC10.67□□□□□ -0.7
HSPG2P98160 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC10.67□□□□□ -0.7
HSPG2P98160 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 AC129492.6-201ENST00000611383 1305 ntBASIC10.67□□□□□ -0.7
HSPG2P98160 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
HSPG2P98160 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 HNRNPA3P1-201ENST00000401429 1139 ntBASIC10.67□□□□□ -0.7
HSPG2P98160 HNRNPA3P5-201ENST00000455201 833 ntBASIC10.67□□□□□ -0.7
HSPG2P98160 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC10.67□□□□□ -0.7
HSPG2P98160 SATB1-217ENST00000493952 626 ntTSL 3 BASIC10.67□□□□□ -0.7
HSPG2P98160 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC10.67□□□□□ -0.7
HSPG2P98160 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC10.66□□□□□ -0.7
HSPG2P98160 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC10.66□□□□□ -0.7
HSPG2P98160 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 AC009949.1-201ENST00000623048 1830 ntBASIC10.66□□□□□ -0.7
HSPG2P98160 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC10.66□□□□□ -0.7
HSPG2P98160 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
HSPG2P98160 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC10.66□□□□□ -0.7
HSPG2P98160 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC10.66□□□□□ -0.7
HSPG2P98160 ARL16-210ENST00000574938 751 ntTSL 2 BASIC10.66□□□□□ -0.7
HSPG2P98160 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
HSPG2P98160 CTBP2P3-201ENST00000585629 1255 ntBASIC10.66□□□□□ -0.7
HSPG2P98160 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC10.66□□□□□ -0.7
HSPG2P98160 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC10.66□□□□□ -0.7
HSPG2P98160 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC10.66□□□□□ -0.7
HSPG2P98160 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC10.66□□□□□ -0.7
HSPG2P98160 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC10.66□□□□□ -0.7
HSPG2P98160 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC10.66□□□□□ -0.7
HSPG2P98160 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC10.66□□□□□ -0.7
HSPG2P98160 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC10.66□□□□□ -0.7
HSPG2P98160 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC10.66□□□□□ -0.7
HSPG2P98160 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
HSPG2P98160 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC10.66□□□□□ -0.7
HSPG2P98160 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC10.66□□□□□ -0.7
HSPG2P98160 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC10.66□□□□□ -0.7
HSPG2P98160 PFAS-212ENST00000625942 396 ntTSL 5 BASIC10.66□□□□□ -0.7
HSPG2P98160 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC10.66□□□□□ -0.7
HSPG2P98160 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC10.66□□□□□ -0.7
HSPG2P98160 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
HSPG2P98160 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC10.66□□□□□ -0.7
HSPG2P98160 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC10.65□□□□□ -0.7
HSPG2P98160 AL844908.2-201ENST00000609461 460 ntBASIC10.65□□□□□ -0.7
HSPG2P98160 AL161645.1-201ENST00000622716 1255 ntBASIC10.65□□□□□ -0.7
HSPG2P98160 RPSAP52-203ENST00000622976 1023 ntBASIC10.65□□□□□ -0.7
HSPG2P98160 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC10.65□□□□□ -0.7
HSPG2P98160 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC10.65□□□□□ -0.7
HSPG2P98160 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.7
HSPG2P98160 AL096828.2-201ENST00000567259 1965 ntBASIC10.65□□□□□ -0.7
HSPG2P98160 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC10.65□□□□□ -0.7
HSPG2P98160 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC10.65□□□□□ -0.7
HSPG2P98160 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC10.65□□□□□ -0.7
HSPG2P98160 ACTG1P4-201ENST00000425123 1122 ntBASIC10.65□□□□□ -0.7
HSPG2P98160 ACTBP11-201ENST00000436287 1126 ntBASIC10.65□□□□□ -0.7
HSPG2P98160 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC10.65□□□□□ -0.7
HSPG2P98160 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC10.65□□□□□ -0.7
HSPG2P98160 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC10.65□□□□□ -0.7
HSPG2P98160 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC10.65□□□□□ -0.7
HSPG2P98160 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms