Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDX1P47902 LINC02199-201ENST00000506655 2702 ntBASIC14.33□□□□□ -0.12
CDX1P47902 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CDX1P47902 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDX1P47902 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDX1P47902 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CDX1P47902 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC14.32□□□□□ -0.12
CDX1P47902 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDX1P47902 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC14.32□□□□□ -0.12
CDX1P47902 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
CDX1P47902 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC14.32□□□□□ -0.12
CDX1P47902 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC14.32□□□□□ -0.12
CDX1P47902 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC14.32□□□□□ -0.12
CDX1P47902 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CDX1P47902 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDX1P47902 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC14.32□□□□□ -0.12
CDX1P47902 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CDX1P47902 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDX1P47902 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.32□□□□□ -0.12
CDX1P47902 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC14.32□□□□□ -0.12
CDX1P47902 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDX1P47902 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CDX1P47902 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
CDX1P47902 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CDX1P47902 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDX1P47902 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC14.32□□□□□ -0.12
CDX1P47902 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CDX1P47902 AL645929.1-201ENST00000420084 975 ntBASIC14.32□□□□□ -0.12
CDX1P47902 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
CDX1P47902 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CDX1P47902 SPEG-225ENST00000617028 815 ntTSL 5 BASIC14.32□□□□□ -0.12
CDX1P47902 AC079602.3-201ENST00000623931 403 ntBASIC14.32□□□□□ -0.12
CDX1P47902 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
CDX1P47902 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDX1P47902 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDX1P47902 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDX1P47902 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC14.32□□□□□ -0.12
CDX1P47902 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC14.32□□□□□ -0.12
CDX1P47902 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC14.32□□□□□ -0.12
CDX1P47902 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC14.32□□□□□ -0.12
CDX1P47902 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC14.32□□□□□ -0.12
CDX1P47902 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
CDX1P47902 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CDX1P47902 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CDX1P47902 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDX1P47902 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CDX1P47902 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CDX1P47902 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDX1P47902 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDX1P47902 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CDX1P47902 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CDX1P47902 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC14.31□□□□□ -0.12
CDX1P47902 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.31□□□□□ -0.12
CDX1P47902 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CDX1P47902 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CDX1P47902 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.31□□□□□ -0.12
CDX1P47902 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC14.31□□□□□ -0.12
CDX1P47902 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CDX1P47902 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC14.31□□□□□ -0.12
CDX1P47902 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CDX1P47902 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 FXN-203ENST00000396366 922 ntTSL 2 BASIC14.31□□□□□ -0.12
CDX1P47902 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC14.31□□□□□ -0.12
CDX1P47902 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC14.31□□□□□ -0.12
CDX1P47902 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 SPDYE13P-201ENST00000445314 798 ntBASIC14.31□□□□□ -0.12
CDX1P47902 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC14.31□□□□□ -0.12
CDX1P47902 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC14.31□□□□□ -0.12
CDX1P47902 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC14.31□□□□□ -0.12
CDX1P47902 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC14.31□□□□□ -0.12
CDX1P47902 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC14.31□□□□□ -0.12
CDX1P47902 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CDX1P47902 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CDX1P47902 AC105020.1-201ENST00000435356 2205 ntBASIC14.31□□□□□ -0.12
CDX1P47902 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC14.31□□□□□ -0.12
CDX1P47902 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CDX1P47902 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms