Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.47■□□□□ 0.23
SOX3P41225 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 AC125634.1-201ENST00000438758 1403 ntBASIC16.47■□□□□ 0.23
SOX3P41225 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.47■□□□□ 0.23
SOX3P41225 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.47■□□□□ 0.23
SOX3P41225 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.47■□□□□ 0.23
SOX3P41225 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.47■□□□□ 0.23
SOX3P41225 KRT16P4-201ENST00000453883 522 ntBASIC16.47■□□□□ 0.23
SOX3P41225 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.47■□□□□ 0.23
SOX3P41225 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.47■□□□□ 0.23
SOX3P41225 DUTP2-201ENST00000519164 463 ntBASIC16.47■□□□□ 0.23
SOX3P41225 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.47■□□□□ 0.23
SOX3P41225 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.47■□□□□ 0.23
SOX3P41225 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.47■□□□□ 0.23
SOX3P41225 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.47■□□□□ 0.23
SOX3P41225 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.47■□□□□ 0.23
SOX3P41225 AC114341.1-201ENST00000618070 349 ntBASIC16.47■□□□□ 0.23
SOX3P41225 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
SOX3P41225 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
SOX3P41225 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.47■□□□□ 0.23
SOX3P41225 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.47■□□□□ 0.23
SOX3P41225 TP73-AS1-210ENST00000637775 1455 ntBASIC16.47■□□□□ 0.23
SOX3P41225 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX3P41225 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
SOX3P41225 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
SOX3P41225 AC022898.2-201ENST00000616822 1312 ntBASIC16.46■□□□□ 0.23
SOX3P41225 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX3P41225 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX3P41225 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SOX3P41225 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
SOX3P41225 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
SOX3P41225 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
SOX3P41225 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX3P41225 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX3P41225 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.46■□□□□ 0.23
SOX3P41225 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
SOX3P41225 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
SOX3P41225 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX3P41225 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX3P41225 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX3P41225 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX3P41225 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX3P41225 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.46■□□□□ 0.23
SOX3P41225 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.46■□□□□ 0.23
SOX3P41225 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX3P41225 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX3P41225 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.46■□□□□ 0.23
SOX3P41225 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX3P41225 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.46■□□□□ 0.23
SOX3P41225 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SOX3P41225 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.46■□□□□ 0.23
SOX3P41225 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SOX3P41225 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.46■□□□□ 0.23
SOX3P41225 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.46■□□□□ 0.23
SOX3P41225 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX3P41225 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
SOX3P41225 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
SOX3P41225 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX3P41225 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX3P41225 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
SOX3P41225 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.46■□□□□ 0.23
SOX3P41225 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.46■□□□□ 0.23
SOX3P41225 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SOX3P41225 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.46■□□□□ 0.22
SOX3P41225 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.45■□□□□ 0.22
SOX3P41225 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SOX3P41225 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX3P41225 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
SOX3P41225 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms