Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
MSX2P35548 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
MSX2P35548 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSX2P35548 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
MSX2P35548 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.71■□□□□ 0.27
MSX2P35548 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
MSX2P35548 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSX2P35548 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSX2P35548 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSX2P35548 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.71■□□□□ 0.27
MSX2P35548 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
MSX2P35548 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSX2P35548 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSX2P35548 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
MSX2P35548 KRT18P29-201ENST00000397031 1267 ntBASIC16.71■□□□□ 0.27
MSX2P35548 DDX43P3-201ENST00000441064 443 ntBASIC16.71■□□□□ 0.27
MSX2P35548 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC16.71■□□□□ 0.27
MSX2P35548 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC16.71■□□□□ 0.27
MSX2P35548 AL353719.1-201ENST00000566847 864 ntBASIC16.71■□□□□ 0.27
MSX2P35548 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC16.71■□□□□ 0.27
MSX2P35548 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC16.71■□□□□ 0.27
MSX2P35548 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC16.71■□□□□ 0.27
MSX2P35548 SPIB-206ENST00000596074 847 ntTSL 2 BASIC16.71■□□□□ 0.27
MSX2P35548 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC16.71■□□□□ 0.27
MSX2P35548 REXO1L10P-201ENST00000615707 1290 ntBASIC16.71■□□□□ 0.27
MSX2P35548 REXO1L12P-201ENST00000622156 912 ntBASIC16.71■□□□□ 0.27
MSX2P35548 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC16.71■□□□□ 0.27
MSX2P35548 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSX2P35548 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.71■□□□□ 0.27
MSX2P35548 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSX2P35548 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.71■□□□□ 0.27
MSX2P35548 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
MSX2P35548 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSX2P35548 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSX2P35548 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.71■□□□□ 0.27
MSX2P35548 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
MSX2P35548 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSX2P35548 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSX2P35548 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
MSX2P35548 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
MSX2P35548 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
MSX2P35548 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSX2P35548 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC16.7■□□□□ 0.26
MSX2P35548 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
MSX2P35548 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSX2P35548 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSX2P35548 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSX2P35548 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSX2P35548 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSX2P35548 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSX2P35548 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
MSX2P35548 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSX2P35548 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
MSX2P35548 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSX2P35548 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSX2P35548 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
MSX2P35548 AC092364.2-201ENST00000596710 2692 ntBASIC16.7■□□□□ 0.26
MSX2P35548 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSX2P35548 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
MSX2P35548 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
MSX2P35548 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.7■□□□□ 0.26
MSX2P35548 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSX2P35548 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC16.7■□□□□ 0.26
MSX2P35548 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSX2P35548 DENND3-207ENST00000518347 850 ntTSL 2 BASIC16.7■□□□□ 0.26
MSX2P35548 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.7■□□□□ 0.26
MSX2P35548 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.7■□□□□ 0.26
MSX2P35548 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.7■□□□□ 0.26
MSX2P35548 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC16.7■□□□□ 0.26
MSX2P35548 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSX2P35548 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSX2P35548 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
MSX2P35548 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
MSX2P35548 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSX2P35548 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSX2P35548 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSX2P35548 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSX2P35548 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
MSX2P35548 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSX2P35548 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSX2P35548 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSX2P35548 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSX2P35548 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
MSX2P35548 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.69■□□□□ 0.26
MSX2P35548 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSX2P35548 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSX2P35548 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSX2P35548 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MSX2P35548 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.69■□□□□ 0.26
MSX2P35548 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC16.69■□□□□ 0.26
MSX2P35548 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.69■□□□□ 0.26
MSX2P35548 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MSX2P35548 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSX2P35548 GRAMD4P1-201ENST00000435181 1110 ntBASIC16.69■□□□□ 0.26
MSX2P35548 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
MSX2P35548 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.69■□□□□ 0.26
MSX2P35548 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.69■□□□□ 0.26
MSX2P35548 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC16.69■□□□□ 0.26
MSX2P35548 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSX2P35548 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms