Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.41■□□□□ 0.38
MSH3P20585 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH3P20585 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.41■□□□□ 0.38
MSH3P20585 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.41■□□□□ 0.38
MSH3P20585 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.41■□□□□ 0.38
MSH3P20585 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
MSH3P20585 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH3P20585 LINC00304-203ENST00000565008 1864 ntBASIC17.41■□□□□ 0.38
MSH3P20585 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSH3P20585 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.41■□□□□ 0.38
MSH3P20585 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
MSH3P20585 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH3P20585 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH3P20585 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH3P20585 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH3P20585 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MSH3P20585 PRORSD1P-202ENST00000563365 2154 ntBASIC17.4■□□□□ 0.38
MSH3P20585 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH3P20585 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MSH3P20585 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.4■□□□□ 0.38
MSH3P20585 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MSH3P20585 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.4■□□□□ 0.38
MSH3P20585 AC133963.1-201ENST00000504166 1679 ntBASIC17.4■□□□□ 0.38
MSH3P20585 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MSH3P20585 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.4■□□□□ 0.38
MSH3P20585 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MSH3P20585 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH3P20585 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.4■□□□□ 0.38
MSH3P20585 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.4■□□□□ 0.38
MSH3P20585 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH3P20585 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
MSH3P20585 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
MSH3P20585 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.4■□□□□ 0.38
MSH3P20585 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.4■□□□□ 0.38
MSH3P20585 AC019129.2-201ENST00000609837 1235 ntBASIC17.4■□□□□ 0.38
MSH3P20585 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.4■□□□□ 0.38
MSH3P20585 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.4■□□□□ 0.38
MSH3P20585 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH3P20585 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MSH3P20585 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH3P20585 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH3P20585 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH3P20585 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH3P20585 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH3P20585 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
MSH3P20585 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MSH3P20585 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH3P20585 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.4■□□□□ 0.38
MSH3P20585 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
MSH3P20585 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MSH3P20585 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSH3P20585 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSH3P20585 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.39■□□□□ 0.37
MSH3P20585 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.39■□□□□ 0.37
MSH3P20585 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSH3P20585 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MSH3P20585 MYCLP1-201ENST00000372451 1075 ntBASIC17.39■□□□□ 0.37
MSH3P20585 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
MSH3P20585 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.39■□□□□ 0.37
MSH3P20585 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.39■□□□□ 0.37
MSH3P20585 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MSH3P20585 IFNL4P1-201ENST00000607083 540 ntBASIC17.39■□□□□ 0.37
MSH3P20585 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.39■□□□□ 0.37
MSH3P20585 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.39■□□□□ 0.37
MSH3P20585 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
MSH3P20585 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
MSH3P20585 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSH3P20585 AL049757.1-201ENST00000616842 1596 ntBASIC17.39■□□□□ 0.37
MSH3P20585 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.39■□□□□ 0.37
MSH3P20585 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSH3P20585 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.39■□□□□ 0.37
MSH3P20585 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSH3P20585 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MSH3P20585 KRT8P10-201ENST00000450021 1447 ntBASIC17.38■□□□□ 0.37
MSH3P20585 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
MSH3P20585 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.38■□□□□ 0.37
MSH3P20585 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.38■□□□□ 0.37
MSH3P20585 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSH3P20585 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.38■□□□□ 0.37
MSH3P20585 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSH3P20585 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MSH3P20585 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MSH3P20585 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.38■□□□□ 0.37
MSH3P20585 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
MSH3P20585 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.38■□□□□ 0.37
MSH3P20585 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.38■□□□□ 0.37
MSH3P20585 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MSH3P20585 AL450487.1-201ENST00000426799 995 ntBASIC17.38■□□□□ 0.37
MSH3P20585 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.38■□□□□ 0.37
MSH3P20585 ABCD1P5-201ENST00000445663 754 ntBASIC17.38■□□□□ 0.37
MSH3P20585 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.38■□□□□ 0.37
MSH3P20585 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.38■□□□□ 0.37
MSH3P20585 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MSH3P20585 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
MSH3P20585 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
MSH3P20585 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.38■□□□□ 0.37
MSH3P20585 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.38■□□□□ 0.37
MSH3P20585 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
MSH3P20585 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.38■□□□□ 0.37
MSH3P20585 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms