Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB1P09429 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
HMGB1P09429 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.6■□□□□ 0.89
HMGB1P09429 FUOM-202ENST00000368551 628 ntTSL 3 BASIC20.6■□□□□ 0.89
HMGB1P09429 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB1P09429 FICD-205ENST00000552758 603 ntTSL 2 BASIC20.6■□□□□ 0.89
HMGB1P09429 PNN-202ENST00000553331 656 ntTSL 3 BASIC20.6■□□□□ 0.89
HMGB1P09429 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB1P09429 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB1P09429 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB1P09429 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB1P09429 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
HMGB1P09429 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC20.59■□□□□ 0.89
HMGB1P09429 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB1P09429 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB1P09429 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
HMGB1P09429 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB1P09429 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB1P09429 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC20.59■□□□□ 0.89
HMGB1P09429 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB1P09429 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
HMGB1P09429 SOD2-201ENST00000337404 991 ntTSL 2 BASIC20.59■□□□□ 0.89
HMGB1P09429 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
HMGB1P09429 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB1P09429 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC20.59■□□□□ 0.89
HMGB1P09429 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB1P09429 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
HMGB1P09429 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
HMGB1P09429 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
HMGB1P09429 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB1P09429 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
HMGB1P09429 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC20.59■□□□□ 0.89
HMGB1P09429 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB1P09429 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB1P09429 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB1P09429 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGB1P09429 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HMGB1P09429 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGB1P09429 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20.58■□□□□ 0.89
HMGB1P09429 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGB1P09429 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC20.58■□□□□ 0.89
HMGB1P09429 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HMGB1P09429 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
HMGB1P09429 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
HMGB1P09429 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGB1P09429 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
HMGB1P09429 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
HMGB1P09429 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HMGB1P09429 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HMGB1P09429 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGB1P09429 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC20.58■□□□□ 0.89
HMGB1P09429 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
HMGB1P09429 NUS1P1-201ENST00000446295 882 ntBASIC20.58■□□□□ 0.89
HMGB1P09429 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20.58■□□□□ 0.89
HMGB1P09429 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.58■□□□□ 0.89
HMGB1P09429 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HMGB1P09429 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC20.58■□□□□ 0.89
HMGB1P09429 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC20.58■□□□□ 0.89
HMGB1P09429 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
HMGB1P09429 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC20.58■□□□□ 0.89
HMGB1P09429 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
HMGB1P09429 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC20.58■□□□□ 0.88
HMGB1P09429 RHBDF1P1-201ENST00000427504 1941 ntBASIC20.58■□□□□ 0.88
HMGB1P09429 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
HMGB1P09429 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.58■□□□□ 0.88
HMGB1P09429 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HMGB1P09429 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HMGB1P09429 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC20.58■□□□□ 0.88
HMGB1P09429 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
HMGB1P09429 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
HMGB1P09429 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC20.58■□□□□ 0.88
HMGB1P09429 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
HMGB1P09429 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
HMGB1P09429 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HMGB1P09429 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC20.57■□□□□ 0.88
HMGB1P09429 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB1P09429 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB1P09429 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB1P09429 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
HMGB1P09429 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC20.57■□□□□ 0.88
HMGB1P09429 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB1P09429 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.57■□□□□ 0.88
HMGB1P09429 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
HMGB1P09429 SLC25A1P3-201ENST00000395415 828 ntBASIC20.57■□□□□ 0.88
HMGB1P09429 NUS1P2-201ENST00000417358 873 ntBASIC20.57■□□□□ 0.88
HMGB1P09429 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC20.57■□□□□ 0.88
HMGB1P09429 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC20.57■□□□□ 0.88
HMGB1P09429 ABCD1P5-201ENST00000445663 754 ntBASIC20.57■□□□□ 0.88
HMGB1P09429 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
HMGB1P09429 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.57■□□□□ 0.88
HMGB1P09429 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB1P09429 AL591684.3-201ENST00000605187 298 ntBASIC20.57■□□□□ 0.88
HMGB1P09429 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
HMGB1P09429 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
HMGB1P09429 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC20.57■□□□□ 0.88
HMGB1P09429 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB1P09429 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC20.57■□□□□ 0.88
HMGB1P09429 AL135999.2-201ENST00000622438 1686 ntBASIC20.57■□□□□ 0.88
HMGB1P09429 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB1P09429 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms