Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS4BO75351 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS4BO75351 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS4BO75351 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS4BO75351 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS4BO75351 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS4BO75351 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS4BO75351 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS4BO75351 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.16■□□□□ 0.34
VPS4BO75351 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
VPS4BO75351 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.15■□□□□ 0.34
VPS4BO75351 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS4BO75351 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS4BO75351 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.15■□□□□ 0.34
VPS4BO75351 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS4BO75351 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS4BO75351 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS4BO75351 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS4BO75351 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
VPS4BO75351 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS4BO75351 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
VPS4BO75351 AC009078.2-202ENST00000463353 338 ntBASIC17.15■□□□□ 0.34
VPS4BO75351 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.15■□□□□ 0.34
VPS4BO75351 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.15■□□□□ 0.34
VPS4BO75351 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS4BO75351 AC091304.2-201ENST00000564639 760 ntBASIC17.15■□□□□ 0.34
VPS4BO75351 AP002414.4-201ENST00000589764 1148 ntBASIC17.15■□□□□ 0.34
VPS4BO75351 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
VPS4BO75351 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS4BO75351 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
VPS4BO75351 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS4BO75351 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS4BO75351 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS4BO75351 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS4BO75351 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
VPS4BO75351 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS4BO75351 NKILA-202ENST00000614771 2598 ntBASIC17.15■□□□□ 0.34
VPS4BO75351 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS4BO75351 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS4BO75351 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS4BO75351 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS4BO75351 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VPS4BO75351 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
VPS4BO75351 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
VPS4BO75351 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS4BO75351 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS4BO75351 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS4BO75351 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS4BO75351 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
VPS4BO75351 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VPS4BO75351 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS4BO75351 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VPS4BO75351 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VPS4BO75351 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS4BO75351 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
VPS4BO75351 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VPS4BO75351 EMBP1-201ENST00000458200 901 ntBASIC17.14■□□□□ 0.33
VPS4BO75351 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.14■□□□□ 0.33
VPS4BO75351 AC092597.1-201ENST00000487352 616 ntBASIC17.14■□□□□ 0.33
VPS4BO75351 AC079776.4-201ENST00000511039 504 ntBASIC17.14■□□□□ 0.33
VPS4BO75351 AL160237.2-201ENST00000556165 472 ntBASIC17.14■□□□□ 0.33
VPS4BO75351 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS4BO75351 MIR3180-1-201ENST00000580374 94 ntBASIC17.14■□□□□ 0.33
VPS4BO75351 MIR3180-3-201ENST00000584616 94 ntBASIC17.14■□□□□ 0.33
VPS4BO75351 AC024563.2-201ENST00000603282 481 ntBASIC17.14■□□□□ 0.33
VPS4BO75351 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
VPS4BO75351 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.14■□□□□ 0.33
VPS4BO75351 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VPS4BO75351 BX276092.7-203ENST00000637198 1536 ntBASIC17.14■□□□□ 0.33
VPS4BO75351 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS4BO75351 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS4BO75351 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
VPS4BO75351 AC099398.1-201ENST00000567919 2776 ntBASIC17.14■□□□□ 0.33
VPS4BO75351 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS4BO75351 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS4BO75351 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS4BO75351 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS4BO75351 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS4BO75351 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS4BO75351 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS4BO75351 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS4BO75351 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.13■□□□□ 0.33
VPS4BO75351 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS4BO75351 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS4BO75351 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS4BO75351 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
VPS4BO75351 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS4BO75351 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS4BO75351 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
VPS4BO75351 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS4BO75351 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS4BO75351 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS4BO75351 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS4BO75351 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS4BO75351 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS4BO75351 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS4BO75351 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS4BO75351 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
VPS4BO75351 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS4BO75351 AL031008.1-201ENST00000619963 541 ntBASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms