Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZIC3O60481 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZIC3O60481 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ZIC3O60481 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZIC3O60481 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC15.7■□□□□ 0.1
ZIC3O60481 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
ZIC3O60481 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZIC3O60481 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZIC3O60481 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZIC3O60481 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC15.7■□□□□ 0.1
ZIC3O60481 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZIC3O60481 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZIC3O60481 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZIC3O60481 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZIC3O60481 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC15.7■□□□□ 0.1
ZIC3O60481 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC15.7■□□□□ 0.1
ZIC3O60481 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC15.7■□□□□ 0.1
ZIC3O60481 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.7■□□□□ 0.1
ZIC3O60481 BX640515.1-201ENST00000617215 977 ntBASIC15.7■□□□□ 0.1
ZIC3O60481 ABBA01031661.1-201ENST00000634362 1253 ntBASIC15.7■□□□□ 0.1
ZIC3O60481 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZIC3O60481 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZIC3O60481 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ZIC3O60481 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZIC3O60481 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ZIC3O60481 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZIC3O60481 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
ZIC3O60481 AL138688.1-201ENST00000624851 1594 ntBASIC15.7■□□□□ 0.1
ZIC3O60481 LINC00896-202ENST00000609602 2128 ntBASIC15.7■□□□□ 0.1
ZIC3O60481 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC15.7■□□□□ 0.1
ZIC3O60481 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC15.69■□□□□ 0.1
ZIC3O60481 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZIC3O60481 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ZIC3O60481 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
ZIC3O60481 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZIC3O60481 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZIC3O60481 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZIC3O60481 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZIC3O60481 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC15.69■□□□□ 0.1
ZIC3O60481 AC073621.1-201ENST00000392730 636 ntBASIC15.69■□□□□ 0.1
ZIC3O60481 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.69■□□□□ 0.1
ZIC3O60481 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.69■□□□□ 0.1
ZIC3O60481 AL590627.1-203ENST00000421194 1026 ntBASIC15.69■□□□□ 0.1
ZIC3O60481 ACTG1P4-201ENST00000425123 1122 ntBASIC15.69■□□□□ 0.1
ZIC3O60481 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.69■□□□□ 0.1
ZIC3O60481 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC15.69■□□□□ 0.1
ZIC3O60481 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC15.69■□□□□ 0.1
ZIC3O60481 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.69■□□□□ 0.1
ZIC3O60481 AC006557.2-201ENST00000592985 1240 ntBASIC15.69■□□□□ 0.1
ZIC3O60481 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC15.69■□□□□ 0.1
ZIC3O60481 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZIC3O60481 AP002414.3-201ENST00000589352 1468 ntBASIC15.69■□□□□ 0.1
ZIC3O60481 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZIC3O60481 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ZIC3O60481 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZIC3O60481 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
ZIC3O60481 TPR-209ENST00000613151 2478 ntTSL 5 BASIC15.69■□□□□ 0.1
ZIC3O60481 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ZIC3O60481 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC15.69■□□□□ 0.1
ZIC3O60481 IL9RP2-201ENST00000423948 1312 ntBASIC15.68■□□□□ 0.1
ZIC3O60481 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ZIC3O60481 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ZIC3O60481 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ZIC3O60481 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ZIC3O60481 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
ZIC3O60481 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZIC3O60481 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC15.68■□□□□ 0.1
ZIC3O60481 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZIC3O60481 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZIC3O60481 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC15.68■□□□□ 0.1
ZIC3O60481 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ZIC3O60481 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
ZIC3O60481 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
ZIC3O60481 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC15.68■□□□□ 0.1
ZIC3O60481 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC15.68■□□□□ 0.1
ZIC3O60481 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZIC3O60481 AC006504.4-201ENST00000592118 1568 ntBASIC15.68■□□□□ 0.1
ZIC3O60481 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZIC3O60481 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.68■□□□□ 0.1
ZIC3O60481 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC15.68■□□□□ 0.1
ZIC3O60481 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ZIC3O60481 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC15.68■□□□□ 0.1
ZIC3O60481 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC15.68■□□□□ 0.1
ZIC3O60481 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC15.68■□□□□ 0.1
ZIC3O60481 WDR88-203ENST00000592765 651 ntTSL 5 BASIC15.68■□□□□ 0.1
ZIC3O60481 AL353135.1-201ENST00000606729 504 ntBASIC15.68■□□□□ 0.1
ZIC3O60481 AL139424.1-201ENST00000607572 797 ntBASIC15.68■□□□□ 0.1
ZIC3O60481 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
ZIC3O60481 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC15.68■□□□□ 0.1
ZIC3O60481 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZIC3O60481 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZIC3O60481 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC15.68■□□□□ 0.1
ZIC3O60481 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZIC3O60481 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
ZIC3O60481 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
ZIC3O60481 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
ZIC3O60481 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZIC3O60481 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ZIC3O60481 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ZIC3O60481 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms