Protein–RNA interactions for Protein: O43731

KDELR3, ER lumen protein-retaining receptor 3, humanhuman

Predictions only

Length 214 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDELR3O43731 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
KDELR3O43731 HLA-A-201ENST00000376802 1334 ntBASIC17.7■□□□□ 0.42
KDELR3O43731 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
KDELR3O43731 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
KDELR3O43731 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
KDELR3O43731 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
KDELR3O43731 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
KDELR3O43731 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
KDELR3O43731 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
KDELR3O43731 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
KDELR3O43731 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.69■□□□□ 0.42
KDELR3O43731 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
KDELR3O43731 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.69■□□□□ 0.42
KDELR3O43731 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
KDELR3O43731 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
KDELR3O43731 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
KDELR3O43731 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
KDELR3O43731 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.69■□□□□ 0.42
KDELR3O43731 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.69■□□□□ 0.42
KDELR3O43731 AP001005.1-201ENST00000571755 1248 ntBASIC17.69■□□□□ 0.42
KDELR3O43731 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.69■□□□□ 0.42
KDELR3O43731 AC004706.3-202ENST00000621574 984 ntBASIC17.69■□□□□ 0.42
KDELR3O43731 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
KDELR3O43731 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
KDELR3O43731 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
KDELR3O43731 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
KDELR3O43731 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
KDELR3O43731 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.69■□□□□ 0.42
KDELR3O43731 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
KDELR3O43731 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.69■□□□□ 0.42
KDELR3O43731 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
KDELR3O43731 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.68■□□□□ 0.42
KDELR3O43731 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
KDELR3O43731 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.68■□□□□ 0.42
KDELR3O43731 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
KDELR3O43731 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
KDELR3O43731 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
KDELR3O43731 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
KDELR3O43731 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
KDELR3O43731 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
KDELR3O43731 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.68■□□□□ 0.42
KDELR3O43731 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
KDELR3O43731 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.68■□□□□ 0.42
KDELR3O43731 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.68■□□□□ 0.42
KDELR3O43731 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
KDELR3O43731 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
KDELR3O43731 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.68■□□□□ 0.42
KDELR3O43731 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.68■□□□□ 0.42
KDELR3O43731 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
KDELR3O43731 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.68■□□□□ 0.42
KDELR3O43731 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.68■□□□□ 0.42
KDELR3O43731 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.68■□□□□ 0.42
KDELR3O43731 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
KDELR3O43731 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.68■□□□□ 0.42
KDELR3O43731 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
KDELR3O43731 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
KDELR3O43731 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
KDELR3O43731 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
KDELR3O43731 HTR7P1-202ENST00000624664 4411 ntBASIC17.68■□□□□ 0.42
KDELR3O43731 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
KDELR3O43731 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
KDELR3O43731 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.68■□□□□ 0.42
KDELR3O43731 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
KDELR3O43731 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
KDELR3O43731 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
KDELR3O43731 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
KDELR3O43731 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
KDELR3O43731 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
KDELR3O43731 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
KDELR3O43731 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
KDELR3O43731 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
KDELR3O43731 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
KDELR3O43731 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.67■□□□□ 0.42
KDELR3O43731 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
KDELR3O43731 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
KDELR3O43731 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.67■□□□□ 0.42
KDELR3O43731 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.67■□□□□ 0.42
KDELR3O43731 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.67■□□□□ 0.42
KDELR3O43731 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.67■□□□□ 0.42
KDELR3O43731 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.67■□□□□ 0.42
KDELR3O43731 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.67■□□□□ 0.42
KDELR3O43731 AC006557.2-201ENST00000592985 1240 ntBASIC17.67■□□□□ 0.42
KDELR3O43731 AL353135.1-201ENST00000606729 504 ntBASIC17.67■□□□□ 0.42
KDELR3O43731 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.67■□□□□ 0.42
KDELR3O43731 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
KDELR3O43731 AC008735.5-201ENST00000623544 497 ntBASIC17.67■□□□□ 0.42
KDELR3O43731 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
KDELR3O43731 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
KDELR3O43731 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.67■□□□□ 0.42
KDELR3O43731 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.67■□□□□ 0.42
KDELR3O43731 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
KDELR3O43731 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
KDELR3O43731 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
KDELR3O43731 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
KDELR3O43731 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
KDELR3O43731 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
KDELR3O43731 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
KDELR3O43731 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
KDELR3O43731 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
KDELR3O43731 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms