Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HOXC11O43248 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.73■□□□□ 0.43
HOXC11O43248 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HOXC11O43248 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.73■□□□□ 0.43
HOXC11O43248 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
HOXC11O43248 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HOXC11O43248 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HOXC11O43248 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.73■□□□□ 0.43
HOXC11O43248 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
HOXC11O43248 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HOXC11O43248 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.73■□□□□ 0.43
HOXC11O43248 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.73■□□□□ 0.43
HOXC11O43248 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.72■□□□□ 0.43
HOXC11O43248 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
HOXC11O43248 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC11O43248 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC11O43248 PI4KAP1-204ENST00000612579 1703 ntBASIC17.72■□□□□ 0.43
HOXC11O43248 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC11O43248 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.72■□□□□ 0.43
HOXC11O43248 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.72■□□□□ 0.43
HOXC11O43248 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC11O43248 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.72■□□□□ 0.43
HOXC11O43248 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC11O43248 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.72■□□□□ 0.43
HOXC11O43248 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC11O43248 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC11O43248 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC11O43248 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.72■□□□□ 0.43
HOXC11O43248 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC11O43248 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC17.72■□□□□ 0.43
HOXC11O43248 AC005829.1-201ENST00000570002 483 ntBASIC17.72■□□□□ 0.43
HOXC11O43248 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.72■□□□□ 0.43
HOXC11O43248 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.72■□□□□ 0.43
HOXC11O43248 C20orf181-201ENST00000623918 480 ntBASIC17.72■□□□□ 0.43
HOXC11O43248 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
HOXC11O43248 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC11O43248 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC11O43248 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC11O43248 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC11O43248 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC11O43248 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
HOXC11O43248 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC11O43248 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC11O43248 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC11O43248 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.72■□□□□ 0.43
HOXC11O43248 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.72■□□□□ 0.43
HOXC11O43248 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.71■□□□□ 0.43
HOXC11O43248 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.71■□□□□ 0.43
HOXC11O43248 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC11O43248 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC11O43248 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC11O43248 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.71■□□□□ 0.43
HOXC11O43248 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC11O43248 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
HOXC11O43248 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC11O43248 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC11O43248 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC11O43248 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC11O43248 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC11O43248 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC11O43248 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.71■□□□□ 0.43
HOXC11O43248 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.71■□□□□ 0.43
HOXC11O43248 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.43
HOXC11O43248 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC11O43248 RHOQP3-201ENST00000437982 621 ntBASIC17.71■□□□□ 0.43
HOXC11O43248 AP006288.1-201ENST00000446065 395 ntBASIC17.71■□□□□ 0.43
HOXC11O43248 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.71■□□□□ 0.43
HOXC11O43248 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.71■□□□□ 0.43
HOXC11O43248 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.71■□□□□ 0.43
HOXC11O43248 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.71■□□□□ 0.43
HOXC11O43248 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.71■□□□□ 0.43
HOXC11O43248 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC11O43248 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC11O43248 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
HOXC11O43248 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.71■□□□□ 0.42
HOXC11O43248 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC11O43248 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HOXC11O43248 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC11O43248 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC11O43248 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC11O43248 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.7■□□□□ 0.42
HOXC11O43248 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC11O43248 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.7■□□□□ 0.42
HOXC11O43248 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.7■□□□□ 0.42
HOXC11O43248 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
HOXC11O43248 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC11O43248 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
HOXC11O43248 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC11O43248 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC11O43248 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HOXC11O43248 SLC25A6P5-201ENST00000435663 894 ntBASIC17.7■□□□□ 0.42
HOXC11O43248 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.7■□□□□ 0.42
HOXC11O43248 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.7■□□□□ 0.42
HOXC11O43248 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.7■□□□□ 0.42
HOXC11O43248 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.7■□□□□ 0.42
HOXC11O43248 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.7■□□□□ 0.42
HOXC11O43248 PDPK2P-202ENST00000562415 1191 ntBASIC17.7■□□□□ 0.42
HOXC11O43248 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC11O43248 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC11O43248 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms