Protein–RNA interactions for Protein: O15353

FOXN1, Forkhead box protein N1, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN1O15353 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC20.83■□□□□ 0.93
FOXN1O15353 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
FOXN1O15353 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
FOXN1O15353 AC073592.5-201ENST00000624854 528 ntBASIC20.83■□□□□ 0.93
FOXN1O15353 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
FOXN1O15353 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
FOXN1O15353 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.83■□□□□ 0.92
FOXN1O15353 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
FOXN1O15353 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
FOXN1O15353 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
FOXN1O15353 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.83■□□□□ 0.92
FOXN1O15353 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
FOXN1O15353 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
FOXN1O15353 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.82■□□□□ 0.92
FOXN1O15353 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.82■□□□□ 0.92
FOXN1O15353 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN1O15353 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.82■□□□□ 0.92
FOXN1O15353 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
FOXN1O15353 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN1O15353 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
FOXN1O15353 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN1O15353 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
FOXN1O15353 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
FOXN1O15353 DDT-204ENST00000404092 805 ntTSL 3 BASIC20.82■□□□□ 0.92
FOXN1O15353 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC20.82■□□□□ 0.92
FOXN1O15353 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC20.82■□□□□ 0.92
FOXN1O15353 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN1O15353 AC108073.2-201ENST00000464002 357 ntBASIC20.82■□□□□ 0.92
FOXN1O15353 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN1O15353 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN1O15353 CITED2-204ENST00000618718 901 ntTSL 2 BASIC20.82■□□□□ 0.92
FOXN1O15353 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN1O15353 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC20.82■□□□□ 0.92
FOXN1O15353 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
FOXN1O15353 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN1O15353 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC20.82■□□□□ 0.92
FOXN1O15353 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC20.82■□□□□ 0.92
FOXN1O15353 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.82■□□□□ 0.92
FOXN1O15353 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC20.82■□□□□ 0.92
FOXN1O15353 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
FOXN1O15353 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
FOXN1O15353 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
FOXN1O15353 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.81■□□□□ 0.92
FOXN1O15353 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN1O15353 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN1O15353 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN1O15353 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN1O15353 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN1O15353 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN1O15353 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
FOXN1O15353 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.81■□□□□ 0.92
FOXN1O15353 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN1O15353 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN1O15353 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN1O15353 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC20.81■□□□□ 0.92
FOXN1O15353 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC20.81■□□□□ 0.92
FOXN1O15353 SLC25A6P5-201ENST00000435663 894 ntBASIC20.81■□□□□ 0.92
FOXN1O15353 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC20.81■□□□□ 0.92
FOXN1O15353 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC20.81■□□□□ 0.92
FOXN1O15353 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC20.81■□□□□ 0.92
FOXN1O15353 AC015911.4-201ENST00000588022 1070 ntBASIC20.81■□□□□ 0.92
FOXN1O15353 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC20.81■□□□□ 0.92
FOXN1O15353 AC008761.3-201ENST00000624803 892 ntBASIC20.81■□□□□ 0.92
FOXN1O15353 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN1O15353 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN1O15353 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN1O15353 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.81■□□□□ 0.92
FOXN1O15353 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
FOXN1O15353 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN1O15353 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN1O15353 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN1O15353 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC20.8■□□□□ 0.92
FOXN1O15353 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.8■□□□□ 0.92
FOXN1O15353 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC20.8■□□□□ 0.92
FOXN1O15353 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
FOXN1O15353 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN1O15353 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC20.8■□□□□ 0.92
FOXN1O15353 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN1O15353 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN1O15353 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN1O15353 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
FOXN1O15353 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC20.8■□□□□ 0.92
FOXN1O15353 CTNS-203ENST00000399306 803 ntTSL 3 BASIC20.8■□□□□ 0.92
FOXN1O15353 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN1O15353 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN1O15353 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.8■□□□□ 0.92
FOXN1O15353 AC067863.1-201ENST00000494933 530 ntBASIC20.8■□□□□ 0.92
FOXN1O15353 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.8■□□□□ 0.92
FOXN1O15353 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.8■□□□□ 0.92
FOXN1O15353 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC20.8■□□□□ 0.92
FOXN1O15353 LINC02560-201ENST00000596379 459 ntBASIC20.8■□□□□ 0.92
FOXN1O15353 AC004877.2-201ENST00000623941 599 ntBASIC20.8■□□□□ 0.92
FOXN1O15353 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC20.8■□□□□ 0.92
FOXN1O15353 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN1O15353 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN1O15353 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN1O15353 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
FOXN1O15353 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
FOXN1O15353 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC20.79■□□□□ 0.92
FOXN1O15353 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms