Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC008622.2-201ENST00000617006 1229 ntBASIC14.11□□□□□ -0.15
HMGB3O15347 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC14.11□□□□□ -0.15
HMGB3O15347 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.11□□□□□ -0.15
HMGB3O15347 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.11□□□□□ -0.15
HMGB3O15347 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC14.11□□□□□ -0.15
HMGB3O15347 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 TNRC6C-205ENST00000588061 8419 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
HMGB3O15347 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC14.11□□□□□ -0.15
HMGB3O15347 ANTXR2-203ENST00000403729 8273 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HMGB3O15347 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC14.1□□□□□ -0.15
HMGB3O15347 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC14.1□□□□□ -0.15
HMGB3O15347 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC14.1□□□□□ -0.15
HMGB3O15347 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
HMGB3O15347 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC14.1□□□□□ -0.15
HMGB3O15347 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC14.1□□□□□ -0.15
HMGB3O15347 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.1□□□□□ -0.15
HMGB3O15347 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC14.1□□□□□ -0.15
HMGB3O15347 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 AC004980.1-204ENST00000429707 299 ntBASIC14.1□□□□□ -0.15
HMGB3O15347 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
HMGB3O15347 GUSBP6-202ENST00000438529 1198 ntBASIC14.1□□□□□ -0.15
HMGB3O15347 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC14.1□□□□□ -0.15
HMGB3O15347 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.1□□□□□ -0.15
HMGB3O15347 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC14.1□□□□□ -0.15
HMGB3O15347 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC14.1□□□□□ -0.15
HMGB3O15347 LINC01126-201ENST00000623515 1646 ntBASIC14.1□□□□□ -0.15
HMGB3O15347 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
HMGB3O15347 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.1□□□□□ -0.15
HMGB3O15347 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
HMGB3O15347 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
HMGB3O15347 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC14.1□□□□□ -0.15
HMGB3O15347 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
HMGB3O15347 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC14.1□□□□□ -0.15
HMGB3O15347 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
HMGB3O15347 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HMGB3O15347 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
HMGB3O15347 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.09□□□□□ -0.15
HMGB3O15347 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HMGB3O15347 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HMGB3O15347 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HMGB3O15347 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HMGB3O15347 ADAMTSL1-205ENST00000380548 8030 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
HMGB3O15347 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HMGB3O15347 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HMGB3O15347 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HMGB3O15347 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HMGB3O15347 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HMGB3O15347 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
HMGB3O15347 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC14.09□□□□□ -0.15
HMGB3O15347 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC14.09□□□□□ -0.15
HMGB3O15347 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC14.09□□□□□ -0.15
HMGB3O15347 AC026271.2-201ENST00000428091 497 ntBASIC14.09□□□□□ -0.15
HMGB3O15347 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HMGB3O15347 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
HMGB3O15347 AL445675.2-201ENST00000620291 557 ntBASIC14.09□□□□□ -0.15
HMGB3O15347 INO80E-214ENST00000620599 515 ntTSL 2 BASIC14.09□□□□□ -0.15
HMGB3O15347 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC14.09□□□□□ -0.15
HMGB3O15347 PFKL-212ENST00000628044 129 ntTSL 3 BASIC14.09□□□□□ -0.15
HMGB3O15347 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC14.09□□□□□ -0.15
HMGB3O15347 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
HMGB3O15347 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
HMGB3O15347 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC14.09□□□□□ -0.15
HMGB3O15347 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HMGB3O15347 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.09□□□□□ -0.15
HMGB3O15347 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.09□□□□□ -0.15
HMGB3O15347 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms