Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TCRBV7S3A2A0A539 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
TCRBV7S3A2A0A539 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TCRBV7S3A2A0A539 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
TCRBV7S3A2A0A539 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
TCRBV7S3A2A0A539 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
TCRBV7S3A2A0A539 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TCRBV7S3A2A0A539 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.77■□□□□ 0.43
TCRBV7S3A2A0A539 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 RNF216P1-203ENST00000404404 2427 ntBASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 AC011498.5-201ENST00000592027 486 ntBASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TCRBV7S3A2A0A539 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 KRT8P10-201ENST00000450021 1447 ntBASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TCRBV7S3A2A0A539 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 IGHV3-41-201ENST00000613121 348 ntBASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV7S3A2A0A539 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms