Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 LINC01126-201ENST00000623515 1646 ntBASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 SLC25A6P4-201ENST00000586535 553 ntBASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 GPALPP1-207ENST00000611650 899 ntBASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHB3Q9Y5E6 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 YIPF7-202ENST00000415895 1196 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 KRT18P65-201ENST00000439811 1286 ntBASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 AC008686.1-203ENST00000591826 463 ntTSL 2 BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 BNIP3P18-201ENST00000593976 575 ntBASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms