Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
FOXA2Q9Y261 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 NKILA-202ENST00000614771 2598 ntBASIC14.17□□□□□ -0.14
FOXA2Q9Y261 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 LYSMD4-203ENST00000378904 2122 ntBASIC14.17□□□□□ -0.14
FOXA2Q9Y261 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA2Q9Y261 AC099398.1-201ENST00000567919 2776 ntBASIC14.17□□□□□ -0.14
FOXA2Q9Y261 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 CNP-204ENST00000472031 1019 ntTSL 2 BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 GUSBP12-201ENST00000513727 720 ntBASIC14.16□□□□□ -0.14
FOXA2Q9Y261 AC090616.6-201ENST00000582640 721 ntBASIC14.16□□□□□ -0.14
FOXA2Q9Y261 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA2Q9Y261 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 NF2-208ENST00000403435 2568 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms