Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 AC106886.4-201ENST00000623557 2502 ntBASIC18.74■□□□□ 0.59
SIX2Q9NPC8 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 PMPCAP1-201ENST00000508114 1576 ntBASIC18.74■□□□□ 0.59
SIX2Q9NPC8 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 STK19B-204ENST00000512515 211 ntBASIC18.74■□□□□ 0.59
SIX2Q9NPC8 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 AC069148.1-201ENST00000608741 768 ntBASIC18.74■□□□□ 0.59
SIX2Q9NPC8 AC092119.3-201ENST00000612618 583 ntBASIC18.74■□□□□ 0.59
SIX2Q9NPC8 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 AC073592.5-201ENST00000624854 528 ntBASIC18.74■□□□□ 0.59
SIX2Q9NPC8 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SIX2Q9NPC8 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 AC114341.1-201ENST00000618070 349 ntBASIC18.73■□□□□ 0.59
SIX2Q9NPC8 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 AGGF1P2-201ENST00000426656 2106 ntBASIC18.73■□□□□ 0.59
SIX2Q9NPC8 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
SIX2Q9NPC8 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC18.72■□□□□ 0.59
SIX2Q9NPC8 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.72■□□□□ 0.59
SIX2Q9NPC8 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SIX2Q9NPC8 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.72■□□□□ 0.59
SIX2Q9NPC8 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SIX2Q9NPC8 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.72■□□□□ 0.59
SIX2Q9NPC8 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SIX2Q9NPC8 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.72■□□□□ 0.59
SIX2Q9NPC8 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SIX2Q9NPC8 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SIX2Q9NPC8 AC003669.1-201ENST00000334569 611 ntBASIC18.72■□□□□ 0.59
SIX2Q9NPC8 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.72■□□□□ 0.59
SIX2Q9NPC8 KLF4P1-201ENST00000412782 1185 ntBASIC18.72■□□□□ 0.59
SIX2Q9NPC8 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms