Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 RPS8P6-201ENST00000426177 609 ntBASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 AP001160.2-201ENST00000596071 487 ntBASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 AC064836.3-201ENST00000607928 673 ntBASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
TM9SF3Q9HD45 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 AC004967.1-201ENST00000453589 447 ntBASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 AL589182.2-201ENST00000619332 1049 ntBASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 SIRPAP1-201ENST00000448467 1770 ntBASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TM9SF3Q9HD45 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms