Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
MMP28Q9H239 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.5■□□□□ 0.07
MMP28Q9H239 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.5■□□□□ 0.07
MMP28Q9H239 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC15.5■□□□□ 0.07
MMP28Q9H239 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
MMP28Q9H239 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC15.5■□□□□ 0.07
MMP28Q9H239 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
MMP28Q9H239 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.5■□□□□ 0.07
MMP28Q9H239 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC15.5■□□□□ 0.07
MMP28Q9H239 AC087499.1-201ENST00000418141 1075 ntBASIC15.5■□□□□ 0.07
MMP28Q9H239 AC008040.2-201ENST00000461049 708 ntBASIC15.5■□□□□ 0.07
MMP28Q9H239 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC15.5■□□□□ 0.07
MMP28Q9H239 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 AL355075.4-201ENST00000554988 638 ntBASIC15.5■□□□□ 0.07
MMP28Q9H239 AP003071.4-201ENST00000562276 1284 ntBASIC15.5■□□□□ 0.07
MMP28Q9H239 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC15.5■□□□□ 0.07
MMP28Q9H239 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC15.5■□□□□ 0.07
MMP28Q9H239 AP000692.2-201ENST00000608391 879 ntBASIC15.5■□□□□ 0.07
MMP28Q9H239 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
MMP28Q9H239 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
MMP28Q9H239 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC15.5■□□□□ 0.07
MMP28Q9H239 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.5■□□□□ 0.07
MMP28Q9H239 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC15.5■□□□□ 0.07
MMP28Q9H239 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC15.5■□□□□ 0.07
MMP28Q9H239 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC15.5■□□□□ 0.07
MMP28Q9H239 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.5■□□□□ 0.07
MMP28Q9H239 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MMP28Q9H239 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MMP28Q9H239 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
MMP28Q9H239 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC15.49■□□□□ 0.07
MMP28Q9H239 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
MMP28Q9H239 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MMP28Q9H239 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
MMP28Q9H239 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC15.49■□□□□ 0.07
MMP28Q9H239 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
MMP28Q9H239 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
MMP28Q9H239 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
MMP28Q9H239 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC15.49■□□□□ 0.07
MMP28Q9H239 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
MMP28Q9H239 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC15.49■□□□□ 0.07
MMP28Q9H239 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC15.49■□□□□ 0.07
MMP28Q9H239 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC15.49■□□□□ 0.07
MMP28Q9H239 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC15.49■□□□□ 0.07
MMP28Q9H239 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC15.49■□□□□ 0.07
MMP28Q9H239 CKBP1-201ENST00000565489 1086 ntBASIC15.49■□□□□ 0.07
MMP28Q9H239 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC15.49■□□□□ 0.07
MMP28Q9H239 AC010331.1-201ENST00000611423 582 ntBASIC15.49■□□□□ 0.07
MMP28Q9H239 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.49■□□□□ 0.07
MMP28Q9H239 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.49■□□□□ 0.07
MMP28Q9H239 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
MMP28Q9H239 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
MMP28Q9H239 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MMP28Q9H239 AC105917.1-201ENST00000506637 2539 ntBASIC15.49■□□□□ 0.07
MMP28Q9H239 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.49■□□□□ 0.07
MMP28Q9H239 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MMP28Q9H239 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MMP28Q9H239 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MMP28Q9H239 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MMP28Q9H239 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MMP28Q9H239 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MMP28Q9H239 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
MMP28Q9H239 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
MMP28Q9H239 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
MMP28Q9H239 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
MMP28Q9H239 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
MMP28Q9H239 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.48■□□□□ 0.07
MMP28Q9H239 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC15.48■□□□□ 0.07
MMP28Q9H239 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MMP28Q9H239 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MMP28Q9H239 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
MMP28Q9H239 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
MMP28Q9H239 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MMP28Q9H239 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MMP28Q9H239 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MMP28Q9H239 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC15.48■□□□□ 0.07
MMP28Q9H239 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
MMP28Q9H239 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC15.48■□□□□ 0.07
MMP28Q9H239 GRAMD4P8-201ENST00000605465 1115 ntBASIC15.48■□□□□ 0.07
MMP28Q9H239 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC15.48■□□□□ 0.07
MMP28Q9H239 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
MMP28Q9H239 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MMP28Q9H239 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MMP28Q9H239 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MMP28Q9H239 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms