Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC42Q96M95 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.62
CCDC42Q96M95 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC42Q96M95 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC42Q96M95 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.89■□□□□ 0.62
CCDC42Q96M95 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC42Q96M95 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC42Q96M95 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.89■□□□□ 0.61
CCDC42Q96M95 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC42Q96M95 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC18.89■□□□□ 0.61
CCDC42Q96M95 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC42Q96M95 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC42Q96M95 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC42Q96M95 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC42Q96M95 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC42Q96M95 FAM8A6P-201ENST00000407496 1135 ntBASIC18.89■□□□□ 0.61
CCDC42Q96M95 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.89■□□□□ 0.61
CCDC42Q96M95 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
CCDC42Q96M95 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.89■□□□□ 0.61
CCDC42Q96M95 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC42Q96M95 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.89■□□□□ 0.61
CCDC42Q96M95 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CCDC42Q96M95 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC42Q96M95 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC42Q96M95 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC42Q96M95 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
CCDC42Q96M95 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC42Q96M95 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC42Q96M95 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC42Q96M95 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC42Q96M95 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC42Q96M95 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC42Q96M95 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC42Q96M95 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC42Q96M95 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC42Q96M95 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
CCDC42Q96M95 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
CCDC42Q96M95 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC42Q96M95 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
CCDC42Q96M95 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.88■□□□□ 0.61
CCDC42Q96M95 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 PCDHA14-201ENST00000506751 2298 ntBASIC18.88■□□□□ 0.61
CCDC42Q96M95 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 MTCL1P1-201ENST00000446207 792 ntBASIC18.88■□□□□ 0.61
CCDC42Q96M95 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.88■□□□□ 0.61
CCDC42Q96M95 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.88■□□□□ 0.61
CCDC42Q96M95 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.88■□□□□ 0.61
CCDC42Q96M95 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CCDC42Q96M95 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.88■□□□□ 0.61
CCDC42Q96M95 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
CCDC42Q96M95 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC42Q96M95 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.88■□□□□ 0.61
CCDC42Q96M95 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
CCDC42Q96M95 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.87■□□□□ 0.61
CCDC42Q96M95 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC42Q96M95 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC42Q96M95 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC42Q96M95 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC42Q96M95 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC42Q96M95 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CCDC42Q96M95 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC42Q96M95 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC42Q96M95 IGHGP-201ENST00000390555 1178 ntBASIC18.87■□□□□ 0.61
CCDC42Q96M95 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC42Q96M95 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.87■□□□□ 0.61
CCDC42Q96M95 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC42Q96M95 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC42Q96M95 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.87■□□□□ 0.61
CCDC42Q96M95 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.87■□□□□ 0.61
CCDC42Q96M95 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC42Q96M95 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC42Q96M95 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC42Q96M95 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC42Q96M95 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CCDC42Q96M95 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC42Q96M95 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC42Q96M95 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CCDC42Q96M95 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC42Q96M95 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
CCDC42Q96M95 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC42Q96M95 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC42Q96M95 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms