Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 AL118508.1-201ENST00000613502 2345 ntBASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
ATG4AQ8WYN0 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
ATG4AQ8WYN0 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
ATG4AQ8WYN0 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
ATG4AQ8WYN0 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
ATG4AQ8WYN0 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
ATG4AQ8WYN0 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
ATG4AQ8WYN0 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.14■□□□□ 0.5
ATG4AQ8WYN0 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.14■□□□□ 0.5
ATG4AQ8WYN0 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 AC092053.1-201ENST00000605787 1936 ntBASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
ATG4AQ8WYN0 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 AC083849.1-201ENST00000615227 514 ntBASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 FLJ38576-201ENST00000623820 2459 ntBASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.13■□□□□ 0.49
ATG4AQ8WYN0 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.12■□□□□ 0.49
ATG4AQ8WYN0 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms