Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
RC3H1Q5TC82 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC21.83■■□□□ 1.09
RC3H1Q5TC82 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
RC3H1Q5TC82 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RC3H1Q5TC82 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RC3H1Q5TC82 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
RC3H1Q5TC82 HMGA1P7-201ENST00000406908 502 ntBASIC21.83■■□□□ 1.09
RC3H1Q5TC82 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC21.83■■□□□ 1.09
RC3H1Q5TC82 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC21.83■■□□□ 1.09
RC3H1Q5TC82 RBPMS2P1-201ENST00000437762 623 ntBASIC21.83■■□□□ 1.09
RC3H1Q5TC82 FAM207CP-201ENST00000443486 507 ntBASIC21.83■■□□□ 1.09
RC3H1Q5TC82 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RC3H1Q5TC82 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC21.83■■□□□ 1.09
RC3H1Q5TC82 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC21.83■■□□□ 1.09
RC3H1Q5TC82 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC21.83■■□□□ 1.09
RC3H1Q5TC82 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC21.83■■□□□ 1.09
RC3H1Q5TC82 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC21.83■■□□□ 1.09
RC3H1Q5TC82 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
RC3H1Q5TC82 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC21.83■■□□□ 1.09
RC3H1Q5TC82 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
RC3H1Q5TC82 STK4-201ENST00000372801 2038 ntTSL 2 BASIC21.83■■□□□ 1.09
RC3H1Q5TC82 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
RC3H1Q5TC82 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC21.83■■□□□ 1.08
RC3H1Q5TC82 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
RC3H1Q5TC82 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.08
RC3H1Q5TC82 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC21.83■■□□□ 1.08
RC3H1Q5TC82 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
RC3H1Q5TC82 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.83■■□□□ 1.08
RC3H1Q5TC82 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
RC3H1Q5TC82 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 UGT1A2P-201ENST00000454886 866 ntBASIC21.82■■□□□ 1.08
RC3H1Q5TC82 PUDP-206ENST00000540122 825 ntTSL 2 BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 AC005225.4-201ENST00000557330 545 ntBASIC21.82■■□□□ 1.08
RC3H1Q5TC82 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC21.82■■□□□ 1.08
RC3H1Q5TC82 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 CCDC74BP1-201ENST00000508880 1123 ntBASIC21.81■■□□□ 1.08
RC3H1Q5TC82 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 MNT-208ENST00000575394 606 ntTSL 4 BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RC3H1Q5TC82 FLJ13224-201ENST00000313737 1514 ntBASIC21.8■■□□□ 1.08
RC3H1Q5TC82 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 STX6-204ENST00000542060 4809 ntTSL 2 BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms