Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SOX4Q06945 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX4Q06945 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
SOX4Q06945 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX4Q06945 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SOX4Q06945 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SOX4Q06945 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX4Q06945 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX4Q06945 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SOX4Q06945 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.63■□□□□ 0.57
SOX4Q06945 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX4Q06945 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.63■□□□□ 0.57
SOX4Q06945 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
SOX4Q06945 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SOX4Q06945 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.63■□□□□ 0.57
SOX4Q06945 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.63■□□□□ 0.57
SOX4Q06945 AC092865.5-201ENST00000545435 363 ntBASIC18.63■□□□□ 0.57
SOX4Q06945 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.63■□□□□ 0.57
SOX4Q06945 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.63■□□□□ 0.57
SOX4Q06945 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.63■□□□□ 0.57
SOX4Q06945 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.63■□□□□ 0.57
SOX4Q06945 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SOX4Q06945 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.63■□□□□ 0.57
SOX4Q06945 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.63■□□□□ 0.57
SOX4Q06945 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.63■□□□□ 0.57
SOX4Q06945 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX4Q06945 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.63■□□□□ 0.57
SOX4Q06945 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX4Q06945 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SOX4Q06945 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SOX4Q06945 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX4Q06945 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.62■□□□□ 0.57
SOX4Q06945 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX4Q06945 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX4Q06945 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SOX4Q06945 AC134043.2-201ENST00000624206 2238 ntBASIC18.62■□□□□ 0.57
SOX4Q06945 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.62■□□□□ 0.57
SOX4Q06945 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SOX4Q06945 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.62■□□□□ 0.57
SOX4Q06945 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
SOX4Q06945 BX842568.4-201ENST00000421222 227 ntBASIC18.62■□□□□ 0.57
SOX4Q06945 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.62■□□□□ 0.57
SOX4Q06945 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.62■□□□□ 0.57
SOX4Q06945 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX4Q06945 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.62■□□□□ 0.57
SOX4Q06945 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.62■□□□□ 0.57
SOX4Q06945 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
SOX4Q06945 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.62■□□□□ 0.57
SOX4Q06945 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
SOX4Q06945 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.62■□□□□ 0.57
SOX4Q06945 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.62■□□□□ 0.57
SOX4Q06945 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.62■□□□□ 0.57
SOX4Q06945 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX4Q06945 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC18.62■□□□□ 0.57
SOX4Q06945 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.62■□□□□ 0.57
SOX4Q06945 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX4Q06945 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX4Q06945 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX4Q06945 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SOX4Q06945 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SOX4Q06945 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.61■□□□□ 0.57
SOX4Q06945 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX4Q06945 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX4Q06945 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX4Q06945 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX4Q06945 AP002414.1-201ENST00000391405 1147 ntBASIC18.61■□□□□ 0.57
SOX4Q06945 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SOX4Q06945 KRT18P13-201ENST00000400056 1290 ntBASIC18.61■□□□□ 0.57
SOX4Q06945 RNA5SP416-201ENST00000516838 111 ntBASIC18.61■□□□□ 0.57
SOX4Q06945 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.61■□□□□ 0.57
SOX4Q06945 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SOX4Q06945 OR7E47P-204ENST00000575924 449 ntBASIC18.61■□□□□ 0.57
SOX4Q06945 MIR4751-201ENST00000578027 74 ntBASIC18.61■□□□□ 0.57
SOX4Q06945 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.61■□□□□ 0.57
SOX4Q06945 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SOX4Q06945 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX4Q06945 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX4Q06945 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX4Q06945 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX4Q06945 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.6■□□□□ 0.57
SOX4Q06945 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.6■□□□□ 0.57
SOX4Q06945 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SOX4Q06945 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SOX4Q06945 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SOX4Q06945 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.6■□□□□ 0.57
SOX4Q06945 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SOX4Q06945 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SOX4Q06945 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.6■□□□□ 0.57
SOX4Q06945 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
SOX4Q06945 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
SOX4Q06945 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SOX4Q06945 IGLL3P-201ENST00000412472 434 ntBASIC18.6■□□□□ 0.57
SOX4Q06945 AC023274.1-201ENST00000418278 595 ntBASIC18.6■□□□□ 0.57
SOX4Q06945 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.6■□□□□ 0.57
SOX4Q06945 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.6■□□□□ 0.57
SOX4Q06945 VN2R19P-201ENST00000442399 1052 ntBASIC18.6■□□□□ 0.57
SOX4Q06945 HCG4B-203ENST00000450128 991 ntBASIC18.6■□□□□ 0.57
SOX4Q06945 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.6■□□□□ 0.57
SOX4Q06945 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SOX4Q06945 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms