Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP46P62068 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP46P62068 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.4■□□□□ 0.54
USP46P62068 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP46P62068 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP46P62068 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.4■□□□□ 0.54
USP46P62068 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
USP46P62068 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP46P62068 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP46P62068 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
USP46P62068 MIR574-201ENST00000385209 96 ntBASIC18.4■□□□□ 0.54
USP46P62068 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
USP46P62068 AC098831.1-202ENST00000438821 336 ntBASIC18.4■□□□□ 0.54
USP46P62068 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
USP46P62068 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.4■□□□□ 0.54
USP46P62068 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.4■□□□□ 0.54
USP46P62068 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.4■□□□□ 0.54
USP46P62068 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP46P62068 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP46P62068 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.4■□□□□ 0.54
USP46P62068 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP46P62068 AC012317.2-201ENST00000623305 2251 ntBASIC18.4■□□□□ 0.54
USP46P62068 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP46P62068 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP46P62068 TNRC18P3-201ENST00000441896 2691 ntBASIC18.4■□□□□ 0.54
USP46P62068 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP46P62068 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP46P62068 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.39■□□□□ 0.54
USP46P62068 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.39■□□□□ 0.54
USP46P62068 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
USP46P62068 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
USP46P62068 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
USP46P62068 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.39■□□□□ 0.54
USP46P62068 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.54
USP46P62068 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.54
USP46P62068 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP46P62068 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.39■□□□□ 0.53
USP46P62068 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.39■□□□□ 0.53
USP46P62068 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP46P62068 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
USP46P62068 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
USP46P62068 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP46P62068 AC003669.1-201ENST00000334569 611 ntBASIC18.39■□□□□ 0.53
USP46P62068 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP46P62068 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.39■□□□□ 0.53
USP46P62068 LAGE3P1-201ENST00000425356 484 ntBASIC18.39■□□□□ 0.53
USP46P62068 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.39■□□□□ 0.53
USP46P62068 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.39■□□□□ 0.53
USP46P62068 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.39■□□□□ 0.53
USP46P62068 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.39■□□□□ 0.53
USP46P62068 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
USP46P62068 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
USP46P62068 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
USP46P62068 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
USP46P62068 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
USP46P62068 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.39■□□□□ 0.53
USP46P62068 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP46P62068 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
USP46P62068 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP46P62068 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
USP46P62068 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
USP46P62068 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.38■□□□□ 0.53
USP46P62068 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP46P62068 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP46P62068 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP46P62068 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.38■□□□□ 0.53
USP46P62068 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.38■□□□□ 0.53
USP46P62068 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.38■□□□□ 0.53
USP46P62068 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.38■□□□□ 0.53
USP46P62068 AC105339.3-201ENST00000560043 636 ntBASIC18.38■□□□□ 0.53
USP46P62068 AC106730.1-201ENST00000566722 1090 ntBASIC18.38■□□□□ 0.53
USP46P62068 NIFKP4-201ENST00000567275 1192 ntBASIC18.38■□□□□ 0.53
USP46P62068 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP46P62068 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.38■□□□□ 0.53
USP46P62068 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP46P62068 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
USP46P62068 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP46P62068 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
USP46P62068 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
USP46P62068 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP46P62068 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP46P62068 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP46P62068 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP46P62068 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP46P62068 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP46P62068 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP46P62068 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP46P62068 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP46P62068 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.37■□□□□ 0.53
USP46P62068 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP46P62068 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.37■□□□□ 0.53
USP46P62068 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP46P62068 AC005104.2-201ENST00000427818 678 ntBASIC18.37■□□□□ 0.53
USP46P62068 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.37■□□□□ 0.53
USP46P62068 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.37■□□□□ 0.53
USP46P62068 AC002558.1-201ENST00000488906 803 ntBASIC18.37■□□□□ 0.53
USP46P62068 IGHV3-52-201ENST00000519770 353 ntBASIC18.37■□□□□ 0.53
USP46P62068 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.37■□□□□ 0.53
USP46P62068 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.37■□□□□ 0.53
USP46P62068 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms