Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIM2P55344 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIM2P55344 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.61■□□□□ 0.25
LIM2P55344 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIM2P55344 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIM2P55344 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIM2P55344 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
LIM2P55344 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIM2P55344 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.61■□□□□ 0.25
LIM2P55344 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.61■□□□□ 0.25
LIM2P55344 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.61■□□□□ 0.25
LIM2P55344 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.61■□□□□ 0.25
LIM2P55344 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.61■□□□□ 0.25
LIM2P55344 AC091304.2-201ENST00000564639 760 ntBASIC16.61■□□□□ 0.25
LIM2P55344 AC111152.3-201ENST00000569699 673 ntBASIC16.61■□□□□ 0.25
LIM2P55344 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.61■□□□□ 0.25
LIM2P55344 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIM2P55344 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIM2P55344 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIM2P55344 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIM2P55344 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIM2P55344 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.61■□□□□ 0.25
LIM2P55344 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIM2P55344 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
LIM2P55344 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIM2P55344 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
LIM2P55344 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
LIM2P55344 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIM2P55344 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIM2P55344 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIM2P55344 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
LIM2P55344 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIM2P55344 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LIM2P55344 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIM2P55344 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.6■□□□□ 0.25
LIM2P55344 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIM2P55344 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIM2P55344 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIM2P55344 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIM2P55344 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.6■□□□□ 0.25
LIM2P55344 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIM2P55344 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.6■□□□□ 0.25
LIM2P55344 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.6■□□□□ 0.25
LIM2P55344 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
LIM2P55344 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIM2P55344 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
LIM2P55344 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
LIM2P55344 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIM2P55344 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
LIM2P55344 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.6■□□□□ 0.25
LIM2P55344 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.6■□□□□ 0.25
LIM2P55344 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIM2P55344 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIM2P55344 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIM2P55344 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
LIM2P55344 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.6■□□□□ 0.25
LIM2P55344 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LIM2P55344 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIM2P55344 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LIM2P55344 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIM2P55344 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.6■□□□□ 0.25
LIM2P55344 AL023806.1-201ENST00000603994 1649 ntBASIC16.59■□□□□ 0.25
LIM2P55344 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIM2P55344 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.59■□□□□ 0.25
LIM2P55344 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIM2P55344 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
LIM2P55344 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIM2P55344 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIM2P55344 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIM2P55344 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIM2P55344 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIM2P55344 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.59■□□□□ 0.25
LIM2P55344 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIM2P55344 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIM2P55344 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
LIM2P55344 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.59■□□□□ 0.25
LIM2P55344 MYCLP1-201ENST00000372451 1075 ntBASIC16.59■□□□□ 0.25
LIM2P55344 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIM2P55344 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIM2P55344 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.59■□□□□ 0.25
LIM2P55344 DUSP5P1-201ENST00000441325 1139 ntBASIC16.59■□□□□ 0.25
LIM2P55344 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.59■□□□□ 0.25
LIM2P55344 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.59■□□□□ 0.25
LIM2P55344 AC132008.2-207ENST00000454517 770 ntBASIC16.59■□□□□ 0.25
LIM2P55344 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.59■□□□□ 0.25
LIM2P55344 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.59■□□□□ 0.25
LIM2P55344 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIM2P55344 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
LIM2P55344 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.59■□□□□ 0.25
LIM2P55344 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
LIM2P55344 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIM2P55344 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIM2P55344 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.59■□□□□ 0.25
LIM2P55344 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.59■□□□□ 0.25
LIM2P55344 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
LIM2P55344 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIM2P55344 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.59■□□□□ 0.25
LIM2P55344 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIM2P55344 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.59■□□□□ 0.25
LIM2P55344 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms