Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL12P48061 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL12P48061 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
CXCL12P48061 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL12P48061 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL12P48061 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL12P48061 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.31■□□□□ 0.36
CXCL12P48061 GK-202ENST00000378941 458 ntTSL 3 BASIC17.31■□□□□ 0.36
CXCL12P48061 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CXCL12P48061 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.31■□□□□ 0.36
CXCL12P48061 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CXCL12P48061 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.31■□□□□ 0.36
CXCL12P48061 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.31■□□□□ 0.36
CXCL12P48061 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.31■□□□□ 0.36
CXCL12P48061 RN7SL204P-201ENST00000582831 262 ntBASIC17.31■□□□□ 0.36
CXCL12P48061 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.31■□□□□ 0.36
CXCL12P48061 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL12P48061 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL12P48061 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL12P48061 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.31■□□□□ 0.36
CXCL12P48061 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL12P48061 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.31■□□□□ 0.36
CXCL12P48061 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL12P48061 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.3■□□□□ 0.36
CXCL12P48061 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
CXCL12P48061 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CXCL12P48061 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CXCL12P48061 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CXCL12P48061 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CXCL12P48061 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CXCL12P48061 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.3■□□□□ 0.36
CXCL12P48061 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.3■□□□□ 0.36
CXCL12P48061 AC107890.1-201ENST00000422478 521 ntBASIC17.3■□□□□ 0.36
CXCL12P48061 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.3■□□□□ 0.36
CXCL12P48061 SLC25A6P2-201ENST00000497974 877 ntBASIC17.3■□□□□ 0.36
CXCL12P48061 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.3■□□□□ 0.36
CXCL12P48061 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.3■□□□□ 0.36
CXCL12P48061 AC005225.4-201ENST00000557330 545 ntBASIC17.3■□□□□ 0.36
CXCL12P48061 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.3■□□□□ 0.36
CXCL12P48061 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
CXCL12P48061 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CXCL12P48061 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CXCL12P48061 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.3■□□□□ 0.36
CXCL12P48061 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.3■□□□□ 0.36
CXCL12P48061 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.3■□□□□ 0.36
CXCL12P48061 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CXCL12P48061 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.3■□□□□ 0.36
CXCL12P48061 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CXCL12P48061 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CXCL12P48061 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CXCL12P48061 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.29■□□□□ 0.36
CXCL12P48061 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC17.29■□□□□ 0.36
CXCL12P48061 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
CXCL12P48061 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CXCL12P48061 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CXCL12P48061 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC17.29■□□□□ 0.36
CXCL12P48061 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CXCL12P48061 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CXCL12P48061 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.29■□□□□ 0.36
CXCL12P48061 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CXCL12P48061 FAM58DP-201ENST00000428076 619 ntBASIC17.29■□□□□ 0.36
CXCL12P48061 AC087163.2-201ENST00000457299 853 ntBASIC17.29■□□□□ 0.36
CXCL12P48061 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.29■□□□□ 0.36
CXCL12P48061 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CXCL12P48061 AC243562.1-201ENST00000560672 389 ntBASIC17.29■□□□□ 0.36
CXCL12P48061 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC17.29■□□□□ 0.36
CXCL12P48061 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CXCL12P48061 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CXCL12P48061 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.29■□□□□ 0.36
CXCL12P48061 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CXCL12P48061 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CXCL12P48061 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CXCL12P48061 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
CXCL12P48061 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CXCL12P48061 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CXCL12P48061 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
CXCL12P48061 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CXCL12P48061 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL12P48061 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL12P48061 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL12P48061 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL12P48061 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL12P48061 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CXCL12P48061 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL12P48061 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC17.28■□□□□ 0.36
CXCL12P48061 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.28■□□□□ 0.36
CXCL12P48061 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL12P48061 AKAP8P1-201ENST00000434743 1349 ntBASIC17.28■□□□□ 0.36
CXCL12P48061 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL12P48061 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL12P48061 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.28■□□□□ 0.36
CXCL12P48061 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.28■□□□□ 0.36
CXCL12P48061 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL12P48061 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC17.28■□□□□ 0.36
CXCL12P48061 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL12P48061 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.28■□□□□ 0.36
CXCL12P48061 YTHDF3-AS1-201ENST00000603538 718 ntBASIC17.28■□□□□ 0.36
CXCL12P48061 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.28■□□□□ 0.36
CXCL12P48061 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
CXCL12P48061 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms