Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDH3P22223 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
CDH3P22223 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDH3P22223 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDH3P22223 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDH3P22223 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH3P22223 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH3P22223 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.17■□□□□ 0.34
CDH3P22223 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
CDH3P22223 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH3P22223 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH3P22223 REXO1L9P-201ENST00000604264 2108 ntBASIC17.17■□□□□ 0.34
CDH3P22223 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.17■□□□□ 0.34
CDH3P22223 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
CDH3P22223 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH3P22223 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
CDH3P22223 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH3P22223 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDH3P22223 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
CDH3P22223 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH3P22223 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.17■□□□□ 0.34
CDH3P22223 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDH3P22223 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.17■□□□□ 0.34
CDH3P22223 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.17■□□□□ 0.34
CDH3P22223 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
CDH3P22223 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.17■□□□□ 0.34
CDH3P22223 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.17■□□□□ 0.34
CDH3P22223 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.17■□□□□ 0.34
CDH3P22223 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
CDH3P22223 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.17■□□□□ 0.34
CDH3P22223 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH3P22223 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH3P22223 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
CDH3P22223 ABALON-201ENST00000629058 1903 ntBASIC17.17■□□□□ 0.34
CDH3P22223 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH3P22223 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.17■□□□□ 0.34
CDH3P22223 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.17■□□□□ 0.34
CDH3P22223 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CDH3P22223 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH3P22223 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.17■□□□□ 0.34
CDH3P22223 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.17■□□□□ 0.34
CDH3P22223 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDH3P22223 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
CDH3P22223 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDH3P22223 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.17■□□□□ 0.34
CDH3P22223 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDH3P22223 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CDH3P22223 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
CDH3P22223 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 AL513477.1-201ENST00000602865 2407 ntBASIC17.16■□□□□ 0.34
CDH3P22223 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
CDH3P22223 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
CDH3P22223 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.16■□□□□ 0.34
CDH3P22223 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 SAPCD2P3-201ENST00000455031 850 ntBASIC17.16■□□□□ 0.34
CDH3P22223 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.16■□□□□ 0.34
CDH3P22223 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.16■□□□□ 0.34
CDH3P22223 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.16■□□□□ 0.34
CDH3P22223 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.16■□□□□ 0.34
CDH3P22223 LINC00896-202ENST00000609602 2128 ntBASIC17.16■□□□□ 0.34
CDH3P22223 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
CDH3P22223 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.16■□□□□ 0.34
CDH3P22223 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.16■□□□□ 0.34
CDH3P22223 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.16■□□□□ 0.34
CDH3P22223 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
CDH3P22223 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
CDH3P22223 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.16■□□□□ 0.34
CDH3P22223 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CDH3P22223 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH3P22223 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH3P22223 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH3P22223 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CDH3P22223 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CDH3P22223 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.15■□□□□ 0.34
CDH3P22223 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.15■□□□□ 0.34
CDH3P22223 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH3P22223 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH3P22223 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH3P22223 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms