Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HLA-DOAP06340 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HLA-DOAP06340 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.57■□□□□ 0.88
HLA-DOAP06340 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC20.57■□□□□ 0.88
HLA-DOAP06340 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HLA-DOAP06340 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC20.57■□□□□ 0.88
HLA-DOAP06340 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HLA-DOAP06340 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HLA-DOAP06340 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.57■□□□□ 0.88
HLA-DOAP06340 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
HLA-DOAP06340 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.56■□□□□ 0.88
HLA-DOAP06340 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DOAP06340 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DOAP06340 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DOAP06340 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DOAP06340 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DOAP06340 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DOAP06340 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DOAP06340 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DOAP06340 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC20.56■□□□□ 0.88
HLA-DOAP06340 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC20.56■□□□□ 0.88
HLA-DOAP06340 CIPC-205ENST00000555437 566 ntTSL 3 BASIC20.56■□□□□ 0.88
HLA-DOAP06340 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC20.56■□□□□ 0.88
HLA-DOAP06340 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DOAP06340 AL139327.4-201ENST00000612362 153 ntBASIC20.56■□□□□ 0.88
HLA-DOAP06340 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DOAP06340 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DOAP06340 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.56■□□□□ 0.88
HLA-DOAP06340 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
HLA-DOAP06340 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC20.56■□□□□ 0.88
HLA-DOAP06340 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC20.56■□□□□ 0.88
HLA-DOAP06340 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
HLA-DOAP06340 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
HLA-DOAP06340 AC002310.6-201ENST00000624451 1377 ntBASIC20.56■□□□□ 0.88
HLA-DOAP06340 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DOAP06340 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC20.56■□□□□ 0.88
HLA-DOAP06340 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DOAP06340 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DOAP06340 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.56■□□□□ 0.88
HLA-DOAP06340 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.55■□□□□ 0.88
HLA-DOAP06340 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DOAP06340 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
HLA-DOAP06340 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
HLA-DOAP06340 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DOAP06340 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DOAP06340 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.55■□□□□ 0.88
HLA-DOAP06340 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.55■□□□□ 0.88
HLA-DOAP06340 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC20.55■□□□□ 0.88
HLA-DOAP06340 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
HLA-DOAP06340 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DOAP06340 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC20.55■□□□□ 0.88
HLA-DOAP06340 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC20.55■□□□□ 0.88
HLA-DOAP06340 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC20.55■□□□□ 0.88
HLA-DOAP06340 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DOAP06340 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DOAP06340 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC20.55■□□□□ 0.88
HLA-DOAP06340 AC112482.1-201ENST00000492080 688 ntBASIC20.55■□□□□ 0.88
HLA-DOAP06340 DHDH-204ENST00000523250 634 ntTSL 5 BASIC20.55■□□□□ 0.88
HLA-DOAP06340 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DOAP06340 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
HLA-DOAP06340 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DOAP06340 AC055717.3-201ENST00000622967 595 ntBASIC20.55■□□□□ 0.88
HLA-DOAP06340 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DOAP06340 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
HLA-DOAP06340 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DOAP06340 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DOAP06340 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DOAP06340 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC20.55■□□□□ 0.88
HLA-DOAP06340 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DOAP06340 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.54■□□□□ 0.88
HLA-DOAP06340 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
HLA-DOAP06340 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DOAP06340 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
HLA-DOAP06340 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DOAP06340 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DOAP06340 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DOAP06340 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DOAP06340 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DOAP06340 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
HLA-DOAP06340 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DOAP06340 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DOAP06340 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DOAP06340 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DOAP06340 COMP-202ENST00000425807 2292 ntTSL 2 BASIC20.54■□□□□ 0.88
HLA-DOAP06340 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DOAP06340 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC20.54■□□□□ 0.88
HLA-DOAP06340 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.54■□□□□ 0.88
HLA-DOAP06340 MAL2-202ENST00000531508 892 ntTSL 3 BASIC20.54■□□□□ 0.88
HLA-DOAP06340 COX5A-206ENST00000568783 571 ntTSL 3 BASIC20.54■□□□□ 0.88
HLA-DOAP06340 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC20.54■□□□□ 0.88
HLA-DOAP06340 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC20.54■□□□□ 0.88
HLA-DOAP06340 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC20.54■□□□□ 0.88
HLA-DOAP06340 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DOAP06340 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DOAP06340 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DOAP06340 AL135999.2-201ENST00000622438 1686 ntBASIC20.54■□□□□ 0.88
HLA-DOAP06340 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC20.54■□□□□ 0.88
HLA-DOAP06340 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
HLA-DOAP06340 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
HLA-DOAP06340 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms