Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
NKX2-2O95096 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
NKX2-2O95096 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX2-2O95096 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
NKX2-2O95096 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
NKX2-2O95096 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX2-2O95096 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
NKX2-2O95096 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.13■□□□□ 0.17
NKX2-2O95096 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX2-2O95096 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
NKX2-2O95096 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX2-2O95096 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.13■□□□□ 0.17
NKX2-2O95096 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX2-2O95096 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX2-2O95096 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX2-2O95096 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
NKX2-2O95096 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
NKX2-2O95096 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NKX2-2O95096 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.13■□□□□ 0.17
NKX2-2O95096 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.13■□□□□ 0.17
NKX2-2O95096 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.13■□□□□ 0.17
NKX2-2O95096 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.13■□□□□ 0.17
NKX2-2O95096 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NKX2-2O95096 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.13■□□□□ 0.17
NKX2-2O95096 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
NKX2-2O95096 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NKX2-2O95096 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.13■□□□□ 0.17
NKX2-2O95096 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.13■□□□□ 0.17
NKX2-2O95096 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.13■□□□□ 0.17
NKX2-2O95096 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.13■□□□□ 0.17
NKX2-2O95096 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
NKX2-2O95096 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.13■□□□□ 0.17
NKX2-2O95096 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NKX2-2O95096 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX2-2O95096 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX2-2O95096 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX2-2O95096 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX2-2O95096 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
NKX2-2O95096 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.12■□□□□ 0.17
NKX2-2O95096 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NKX2-2O95096 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NKX2-2O95096 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX2-2O95096 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NKX2-2O95096 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NKX2-2O95096 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.12■□□□□ 0.17
NKX2-2O95096 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX2-2O95096 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX2-2O95096 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
NKX2-2O95096 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.12■□□□□ 0.17
NKX2-2O95096 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.12■□□□□ 0.17
NKX2-2O95096 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.12■□□□□ 0.17
NKX2-2O95096 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.12■□□□□ 0.17
NKX2-2O95096 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX2-2O95096 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.12■□□□□ 0.17
NKX2-2O95096 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.12■□□□□ 0.17
NKX2-2O95096 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX2-2O95096 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NKX2-2O95096 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.12■□□□□ 0.17
NKX2-2O95096 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NKX2-2O95096 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.12■□□□□ 0.17
NKX2-2O95096 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.12■□□□□ 0.17
NKX2-2O95096 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.12■□□□□ 0.17
NKX2-2O95096 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.12■□□□□ 0.17
NKX2-2O95096 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX2-2O95096 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX2-2O95096 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX2-2O95096 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX2-2O95096 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NKX2-2O95096 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NKX2-2O95096 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NKX2-2O95096 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.12■□□□□ 0.17
NKX2-2O95096 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
NKX2-2O95096 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NKX2-2O95096 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC16.11■□□□□ 0.17
NKX2-2O95096 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
NKX2-2O95096 AL135999.2-201ENST00000622438 1686 ntBASIC16.11■□□□□ 0.17
NKX2-2O95096 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NKX2-2O95096 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
NKX2-2O95096 SIGLEC16-201ENST00000599858 1437 ntBASIC16.11■□□□□ 0.17
NKX2-2O95096 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NKX2-2O95096 AC093525.9-201ENST00000624961 1746 ntBASIC16.11■□□□□ 0.17
NKX2-2O95096 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NKX2-2O95096 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.11■□□□□ 0.17
NKX2-2O95096 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.11■□□□□ 0.17
NKX2-2O95096 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
NKX2-2O95096 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.11■□□□□ 0.17
NKX2-2O95096 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NKX2-2O95096 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NKX2-2O95096 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.11■□□□□ 0.17
NKX2-2O95096 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NKX2-2O95096 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NKX2-2O95096 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NKX2-2O95096 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NKX2-2O95096 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
NKX2-2O95096 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NKX2-2O95096 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NKX2-2O95096 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.11■□□□□ 0.17
NKX2-2O95096 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.11■□□□□ 0.17
NKX2-2O95096 SPDYE21P-201ENST00000413323 827 ntBASIC16.11■□□□□ 0.17
NKX2-2O95096 AL020989.1-201ENST00000422979 469 ntBASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms