Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC064836.3-201ENST00000607928 673 ntBASIC14.07□□□□□ -0.16
HOXA3O43365 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC14.07□□□□□ -0.16
HOXA3O43365 AC055717.3-201ENST00000622967 595 ntBASIC14.07□□□□□ -0.16
HOXA3O43365 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA3O43365 USP49-202ENST00000373010 2446 ntTSL 5 BASIC14.07□□□□□ -0.16
HOXA3O43365 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA3O43365 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
HOXA3O43365 AC135776.1-201ENST00000319817 2481 ntBASIC14.07□□□□□ -0.16
HOXA3O43365 AC148477.5-201ENST00000625164 1645 ntBASIC14.07□□□□□ -0.16
HOXA3O43365 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA3O43365 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC14.07□□□□□ -0.16
HOXA3O43365 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC14.07□□□□□ -0.16
HOXA3O43365 AC100803.2-201ENST00000562459 1963 ntBASIC14.07□□□□□ -0.16
HOXA3O43365 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXA3O43365 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
HOXA3O43365 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
HOXA3O43365 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA3O43365 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
HOXA3O43365 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA3O43365 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA3O43365 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXA3O43365 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC14.06□□□□□ -0.16
HOXA3O43365 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 PC-208ENST00000529047 1607 ntTSL 3 BASIC14.06□□□□□ -0.16
HOXA3O43365 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
HOXA3O43365 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 AC003669.1-201ENST00000334569 611 ntBASIC14.06□□□□□ -0.16
HOXA3O43365 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
HOXA3O43365 METTL26-205ENST00000397666 726 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA3O43365 RPSAP43-201ENST00000402237 625 ntBASIC14.06□□□□□ -0.16
HOXA3O43365 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC14.06□□□□□ -0.16
HOXA3O43365 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA3O43365 AC023274.1-201ENST00000418278 595 ntBASIC14.06□□□□□ -0.16
HOXA3O43365 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXA3O43365 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC14.06□□□□□ -0.16
HOXA3O43365 SIGLEC30P-201ENST00000455569 941 ntBASIC14.06□□□□□ -0.16
HOXA3O43365 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA3O43365 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA3O43365 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
HOXA3O43365 AC002347.1-201ENST00000569543 541 ntBASIC14.06□□□□□ -0.16
HOXA3O43365 AC109462.3-201ENST00000573934 613 ntBASIC14.06□□□□□ -0.16
HOXA3O43365 HOTTIP_1.1-201ENST00000620415 57 ntBASIC14.06□□□□□ -0.16
HOXA3O43365 AC004706.3-202ENST00000621574 984 ntBASIC14.06□□□□□ -0.16
HOXA3O43365 AC093503.3-201ENST00000624917 2352 ntBASIC14.06□□□□□ -0.16
HOXA3O43365 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA3O43365 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
HOXA3O43365 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXA3O43365 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA3O43365 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
HOXA3O43365 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA3O43365 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA3O43365 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 POR-209ENST00000439269 1858 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA3O43365 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA3O43365 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXA3O43365 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA3O43365 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC14.05□□□□□ -0.16
HOXA3O43365 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
HOXA3O43365 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA3O43365 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA3O43365 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA3O43365 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA3O43365 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXA3O43365 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA3O43365 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.16
HOXA3O43365 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA3O43365 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
HOXA3O43365 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA3O43365 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA3O43365 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXA3O43365 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA3O43365 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
HOXA3O43365 PMP22-202ENST00000395936 816 ntTSL 3 BASIC14.05□□□□□ -0.16
HOXA3O43365 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXA3O43365 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXA3O43365 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
HOXA3O43365 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
HOXA3O43365 ELK2BP-201ENST00000415014 1224 ntBASIC14.05□□□□□ -0.16
HOXA3O43365 RPS8P6-201ENST00000426177 609 ntBASIC14.05□□□□□ -0.16
HOXA3O43365 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms