Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.13■□□□□ 0.65
CLDN3O15551 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC19.13■□□□□ 0.65
CLDN3O15551 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLDN3O15551 AC064862.7-201ENST00000604520 867 ntBASIC19.13■□□□□ 0.65
CLDN3O15551 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19.13■□□□□ 0.65
CLDN3O15551 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLDN3O15551 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CLDN3O15551 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLDN3O15551 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLDN3O15551 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC19.13■□□□□ 0.65
CLDN3O15551 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC19.13■□□□□ 0.65
CLDN3O15551 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
CLDN3O15551 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLDN3O15551 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLDN3O15551 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLDN3O15551 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLDN3O15551 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
CLDN3O15551 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLDN3O15551 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLDN3O15551 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLDN3O15551 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLDN3O15551 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLDN3O15551 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CLDN3O15551 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.12■□□□□ 0.65
CLDN3O15551 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLDN3O15551 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLDN3O15551 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLDN3O15551 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CLDN3O15551 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC19.12■□□□□ 0.65
CLDN3O15551 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CLDN3O15551 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.12■□□□□ 0.65
CLDN3O15551 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CLDN3O15551 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLDN3O15551 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.12■□□□□ 0.65
CLDN3O15551 AC009078.2-202ENST00000463353 338 ntBASIC19.12■□□□□ 0.65
CLDN3O15551 AF186996.4-201ENST00000467186 377 ntBASIC19.12■□□□□ 0.65
CLDN3O15551 AC073648.2-201ENST00000510116 352 ntBASIC19.12■□□□□ 0.65
CLDN3O15551 STK19B-204ENST00000512515 211 ntBASIC19.12■□□□□ 0.65
CLDN3O15551 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC19.12■□□□□ 0.65
CLDN3O15551 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC19.12■□□□□ 0.65
CLDN3O15551 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.12■□□□□ 0.65
CLDN3O15551 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLDN3O15551 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLDN3O15551 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.12■□□□□ 0.65
CLDN3O15551 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLDN3O15551 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.12■□□□□ 0.65
CLDN3O15551 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLDN3O15551 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC19.11■□□□□ 0.65
CLDN3O15551 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLDN3O15551 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
CLDN3O15551 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLDN3O15551 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLDN3O15551 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CLDN3O15551 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLDN3O15551 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLDN3O15551 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CLDN3O15551 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC19.11■□□□□ 0.65
CLDN3O15551 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CLDN3O15551 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CLDN3O15551 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CLDN3O15551 KRT18P67-201ENST00000432816 1264 ntBASIC19.11■□□□□ 0.65
CLDN3O15551 FDX1P1-201ENST00000449115 551 ntBASIC19.11■□□□□ 0.65
CLDN3O15551 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC19.11■□□□□ 0.65
CLDN3O15551 RNPS1P1-201ENST00000507437 918 ntBASIC19.11■□□□□ 0.65
CLDN3O15551 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.11■□□□□ 0.65
CLDN3O15551 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.11■□□□□ 0.65
CLDN3O15551 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC19.11■□□□□ 0.65
CLDN3O15551 AC004817.3-201ENST00000602957 2129 ntBASIC19.11■□□□□ 0.65
CLDN3O15551 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC19.11■□□□□ 0.65
CLDN3O15551 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CLDN3O15551 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.11■□□□□ 0.65
CLDN3O15551 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CLDN3O15551 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
CLDN3O15551 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.11■□□□□ 0.65
CLDN3O15551 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.11■□□□□ 0.65
CLDN3O15551 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLDN3O15551 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLDN3O15551 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC19.11■□□□□ 0.65
CLDN3O15551 AMT-250ENST00000637682 1823 ntTSL 5 BASIC19.11■□□□□ 0.65
CLDN3O15551 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLDN3O15551 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CLDN3O15551 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLDN3O15551 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
CLDN3O15551 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLDN3O15551 AC133963.1-201ENST00000504166 1679 ntBASIC19.11■□□□□ 0.65
CLDN3O15551 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CLDN3O15551 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN3O15551 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC19.1■□□□□ 0.65
CLDN3O15551 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN3O15551 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.1■□□□□ 0.65
CLDN3O15551 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN3O15551 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN3O15551 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN3O15551 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN3O15551 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC19.1■□□□□ 0.65
CLDN3O15551 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN3O15551 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN3O15551 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.1■□□□□ 0.65
CLDN3O15551 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
CLDN3O15551 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms