Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC29.58■■■□□ 2.33
CUX2O14529 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC29.58■■■□□ 2.33
CUX2O14529 AC133552.6-201ENST00000613406 534 ntBASIC29.58■■■□□ 2.33
CUX2O14529 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC29.58■■■□□ 2.33
CUX2O14529 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC29.58■■■□□ 2.33
CUX2O14529 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
CUX2O14529 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
CUX2O14529 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC29.57■■■□□ 2.32
CUX2O14529 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC29.57■■■□□ 2.32
CUX2O14529 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC29.57■■■□□ 2.32
CUX2O14529 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC29.57■■■□□ 2.32
CUX2O14529 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
CUX2O14529 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC29.57■■■□□ 2.32
CUX2O14529 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC29.57■■■□□ 2.32
CUX2O14529 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
CUX2O14529 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC29.57■■■□□ 2.32
CUX2O14529 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
CUX2O14529 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC29.57■■■□□ 2.32
CUX2O14529 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC29.57■■■□□ 2.32
CUX2O14529 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC29.57■■■□□ 2.32
CUX2O14529 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC29.57■■■□□ 2.32
CUX2O14529 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC29.56■■■□□ 2.32
CUX2O14529 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC29.56■■■□□ 2.32
CUX2O14529 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
CUX2O14529 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC29.56■■■□□ 2.32
CUX2O14529 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC29.56■■■□□ 2.32
CUX2O14529 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC29.56■■■□□ 2.32
CUX2O14529 GLI4-203ENST00000517468 963 ntTSL 5 BASIC29.56■■■□□ 2.32
CUX2O14529 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC29.56■■■□□ 2.32
CUX2O14529 MIR4453-201ENST00000584019 89 ntBASIC29.56■■■□□ 2.32
CUX2O14529 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
CUX2O14529 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
CUX2O14529 AL161645.1-201ENST00000622716 1255 ntBASIC29.56■■■□□ 2.32
CUX2O14529 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC29.56■■■□□ 2.32
CUX2O14529 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
CUX2O14529 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC29.56■■■□□ 2.32
CUX2O14529 AC097637.2-201ENST00000624096 1997 ntBASIC29.56■■■□□ 2.32
CUX2O14529 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
CUX2O14529 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
CUX2O14529 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
CUX2O14529 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC29.55■■■□□ 2.32
CUX2O14529 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
CUX2O14529 DFFBP1-201ENST00000433250 979 ntBASIC29.55■■■□□ 2.32
CUX2O14529 AC234783.1-201ENST00000441761 496 ntBASIC29.55■■■□□ 2.32
CUX2O14529 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
CUX2O14529 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC29.55■■■□□ 2.32
CUX2O14529 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC29.55■■■□□ 2.32
CUX2O14529 AL138828.2-201ENST00000615812 383 ntBASIC29.55■■■□□ 2.32
CUX2O14529 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
CUX2O14529 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
CUX2O14529 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC29.55■■■□□ 2.32
CUX2O14529 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
CUX2O14529 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
CUX2O14529 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
CUX2O14529 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
CUX2O14529 BNIP3P42-201ENST00000454982 569 ntBASIC29.55■■■□□ 2.32
CUX2O14529 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC29.55■■■□□ 2.32
CUX2O14529 ORC6-206ENST00000568364 888 ntTSL 5 BASIC29.55■■■□□ 2.32
CUX2O14529 BNIP3P29-201ENST00000598302 571 ntBASIC29.55■■■□□ 2.32
CUX2O14529 AC011447.5-201ENST00000616168 564 ntBASIC29.55■■■□□ 2.32
CUX2O14529 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC29.54■■■□□ 2.32
CUX2O14529 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC29.54■■■□□ 2.32
CUX2O14529 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC29.54■■■□□ 2.32
CUX2O14529 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC29.54■■■□□ 2.32
CUX2O14529 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
CUX2O14529 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC29.54■■■□□ 2.32
CUX2O14529 AL391825.1-201ENST00000457671 1364 ntBASIC29.54■■■□□ 2.32
CUX2O14529 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC29.54■■■□□ 2.32
CUX2O14529 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC29.54■■■□□ 2.32
CUX2O14529 TTTY23B-201ENST00000442790 549 ntBASIC29.54■■■□□ 2.32
CUX2O14529 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC29.54■■■□□ 2.32
CUX2O14529 AC244093.1-201ENST00000610837 814 ntBASIC29.54■■■□□ 2.32
CUX2O14529 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
CUX2O14529 AL139099.5-201ENST00000635274 300 ntBASIC29.54■■■□□ 2.32
CUX2O14529 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
CUX2O14529 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
CUX2O14529 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
CUX2O14529 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC29.53■■■□□ 2.32
CUX2O14529 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
CUX2O14529 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
CUX2O14529 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC29.53■■■□□ 2.32
CUX2O14529 AC103810.3-201ENST00000583567 96 ntBASIC29.53■■■□□ 2.32
CUX2O14529 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC29.53■■■□□ 2.32
CUX2O14529 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC29.52■■■□□ 2.32
CUX2O14529 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
CUX2O14529 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
CUX2O14529 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
CUX2O14529 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC29.52■■■□□ 2.32
CUX2O14529 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
CUX2O14529 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC29.52■■■□□ 2.32
CUX2O14529 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
CUX2O14529 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC29.52■■■□□ 2.32
CUX2O14529 RN7SL837P-201ENST00000463010 287 ntBASIC29.52■■■□□ 2.32
CUX2O14529 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC29.52■■■□□ 2.32
CUX2O14529 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC29.52■■■□□ 2.32
CUX2O14529 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
CUX2O14529 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
CUX2O14529 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC29.52■■■□□ 2.32
CUX2O14529 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC29.52■■■□□ 2.32
CUX2O14529 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms