Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM49D1C9J1S8 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TRIM49D1C9J1S8 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM49D1C9J1S8 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
TRIM49D1C9J1S8 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM49D1C9J1S8 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM49D1C9J1S8 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM49D1C9J1S8 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM49D1C9J1S8 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.56■□□□□ 0.4
TRIM49D1C9J1S8 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM49D1C9J1S8 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.56■□□□□ 0.4
TRIM49D1C9J1S8 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM49D1C9J1S8 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM49D1C9J1S8 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
TRIM49D1C9J1S8 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.56■□□□□ 0.4
TRIM49D1C9J1S8 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM49D1C9J1S8 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.56■□□□□ 0.4
TRIM49D1C9J1S8 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
TRIM49D1C9J1S8 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.56■□□□□ 0.4
TRIM49D1C9J1S8 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TRIM49D1C9J1S8 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM49D1C9J1S8 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM49D1C9J1S8 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 KRT18P22-201ENST00000402024 1347 ntBASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 SLC25A1P3-201ENST00000395415 828 ntBASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 HLA-F-220ENST00000434407 884 ntBASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 LINC02012-201ENST00000608206 1725 ntBASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.54■□□□□ 0.4
TRIM49D1C9J1S8 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TRIM49D1C9J1S8 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms