Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
COL6A5A8TX70 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC13.41□□□□□ -0.26
COL6A5A8TX70 GABARAPL3-202ENST00000624044 1851 ntBASIC13.41□□□□□ -0.26
COL6A5A8TX70 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
COL6A5A8TX70 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL6A5A8TX70 AC087499.6-201ENST00000411576 835 ntBASIC13.41□□□□□ -0.26
COL6A5A8TX70 LINC00982-205ENST00000420957 435 ntBASIC13.41□□□□□ -0.26
COL6A5A8TX70 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
COL6A5A8TX70 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC13.41□□□□□ -0.26
COL6A5A8TX70 RNA5-8SN1-201ENST00000610460 153 ntBASIC13.41□□□□□ -0.26
COL6A5A8TX70 RNA5-8SN5-202ENST00000612463 153 ntBASIC13.41□□□□□ -0.26
COL6A5A8TX70 RNA5-8SN4-201ENST00000613359 153 ntBASIC13.41□□□□□ -0.26
COL6A5A8TX70 RNA5-8SN5-201ENST00000619471 153 ntBASIC13.41□□□□□ -0.26
COL6A5A8TX70 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A5A8TX70 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A5A8TX70 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A5A8TX70 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A5A8TX70 COBL-210ENST00000632460 1941 ntTSL 5 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A5A8TX70 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 SNCG-201ENST00000348795 684 ntTSL 2 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 APOC3-202ENST00000375345 604 ntTSL 5 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A5A8TX70 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A5A8TX70 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A5A8TX70 AC008738.7-201ENST00000609744 511 ntBASIC13.4□□□□□ -0.26
COL6A5A8TX70 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A5A8TX70 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A5A8TX70 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A5A8TX70 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 TUBB1P2-201ENST00000422712 1306 ntBASIC13.4□□□□□ -0.26
COL6A5A8TX70 TUBB1P1-201ENST00000503144 1300 ntBASIC13.4□□□□□ -0.26
COL6A5A8TX70 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A5A8TX70 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A5A8TX70 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A5A8TX70 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A5A8TX70 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A5A8TX70 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A5A8TX70 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A5A8TX70 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL6A5A8TX70 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 AC008267.7-201ENST00000624570 1194 ntBASIC13.4□□□□□ -0.26
COL6A5A8TX70 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
COL6A5A8TX70 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
COL6A5A8TX70 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.27
COL6A5A8TX70 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC13.4□□□□□ -0.27
COL6A5A8TX70 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.27
COL6A5A8TX70 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC13.39□□□□□ -0.27
COL6A5A8TX70 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A5A8TX70 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
COL6A5A8TX70 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC13.39□□□□□ -0.27
COL6A5A8TX70 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC13.39□□□□□ -0.27
COL6A5A8TX70 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC13.39□□□□□ -0.27
COL6A5A8TX70 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A5A8TX70 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A5A8TX70 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A5A8TX70 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A5A8TX70 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A5A8TX70 SPDYE19P-201ENST00000338590 713 ntBASIC13.39□□□□□ -0.27
COL6A5A8TX70 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A5A8TX70 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
COL6A5A8TX70 FXNP2-201ENST00000411625 547 ntBASIC13.39□□□□□ -0.27
COL6A5A8TX70 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC13.39□□□□□ -0.27
COL6A5A8TX70 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC13.39□□□□□ -0.27
COL6A5A8TX70 AC093004.1-201ENST00000508850 424 ntBASIC13.39□□□□□ -0.27
COL6A5A8TX70 IGHV3-62-201ENST00000520057 340 ntBASIC13.39□□□□□ -0.27
COL6A5A8TX70 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC13.39□□□□□ -0.27
COL6A5A8TX70 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC13.39□□□□□ -0.27
COL6A5A8TX70 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A5A8TX70 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A5A8TX70 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A5A8TX70 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A5A8TX70 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC13.39□□□□□ -0.27
COL6A5A8TX70 GRAMD4P3-201ENST00000621665 1669 ntBASIC13.39□□□□□ -0.27
COL6A5A8TX70 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A5A8TX70 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
COL6A5A8TX70 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
COL6A5A8TX70 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A5A8TX70 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A5A8TX70 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL6A5A8TX70 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms