Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DRB4X5D2U9 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DRB4X5D2U9 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
HLA-DRB4X5D2U9 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DRB4X5D2U9 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC18.21■□□□□ 0.51
HLA-DRB4X5D2U9 SRP68-213ENST00000629930 165 ntTSL 5 BASIC18.21■□□□□ 0.51
HLA-DRB4X5D2U9 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC18.2■□□□□ 0.5
HLA-DRB4X5D2U9 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DRB4X5D2U9 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DRB4X5D2U9 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DRB4X5D2U9 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DRB4X5D2U9 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DRB4X5D2U9 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC18.19■□□□□ 0.5
HLA-DRB4X5D2U9 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DRB4X5D2U9 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DRB4X5D2U9 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
HLA-DRB4X5D2U9 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DRB4X5D2U9 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DRB4X5D2U9 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DRB4X5D2U9 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DRB4X5D2U9 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DRB4X5D2U9 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
HLA-DRB4X5D2U9 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC18.18■□□□□ 0.5
HLA-DRB4X5D2U9 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DRB4X5D2U9 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DRB4X5D2U9 AC060814.1-201ENST00000554326 538 ntBASIC18.18■□□□□ 0.5
HLA-DRB4X5D2U9 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC18.18■□□□□ 0.5
HLA-DRB4X5D2U9 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC18.18■□□□□ 0.5
HLA-DRB4X5D2U9 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DRB4X5D2U9 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DRB4X5D2U9 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DRB4X5D2U9 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DRB4X5D2U9 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC18.17■□□□□ 0.5
HLA-DRB4X5D2U9 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DRB4X5D2U9 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DRB4X5D2U9 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DRB4X5D2U9 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
HLA-DRB4X5D2U9 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DRB4X5D2U9 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DRB4X5D2U9 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DRB4X5D2U9 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC18.16■□□□□ 0.5
HLA-DRB4X5D2U9 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DRB4X5D2U9 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DRB4X5D2U9 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DRB4X5D2U9 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DRB4X5D2U9 AL359504.2-201ENST00000605506 1601 ntBASIC18.16■□□□□ 0.5
HLA-DRB4X5D2U9 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DRB4X5D2U9 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DRB4X5D2U9 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC18.15■□□□□ 0.5
HLA-DRB4X5D2U9 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DRB4X5D2U9 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
HLA-DRB4X5D2U9 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DRB4X5D2U9 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
HLA-DRB4X5D2U9 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DRB4X5D2U9 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DRB4X5D2U9 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DRB4X5D2U9 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC18.15■□□□□ 0.5
HLA-DRB4X5D2U9 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DRB4X5D2U9 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DRB4X5D2U9 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
HLA-DRB4X5D2U9 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.5
HLA-DRB4X5D2U9 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC18.14■□□□□ 0.49
HLA-DRB4X5D2U9 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC18.14■□□□□ 0.49
HLA-DRB4X5D2U9 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC18.14■□□□□ 0.49
HLA-DRB4X5D2U9 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC18.14■□□□□ 0.49
HLA-DRB4X5D2U9 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DRB4X5D2U9 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DRB4X5D2U9 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DRB4X5D2U9 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC18.14■□□□□ 0.49
HLA-DRB4X5D2U9 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DRB4X5D2U9 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
HLA-DRB4X5D2U9 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DRB4X5D2U9 AL157400.5-201ENST00000507624 621 ntBASIC18.13■□□□□ 0.49
HLA-DRB4X5D2U9 AC022413.1-201ENST00000624602 984 ntBASIC18.13■□□□□ 0.49
HLA-DRB4X5D2U9 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DRB4X5D2U9 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC18.13■□□□□ 0.49
HLA-DRB4X5D2U9 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DRB4X5D2U9 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DRB4X5D2U9 LTK-203ENST00000453182 2412 ntTSL 2 BASIC18.13■□□□□ 0.49
HLA-DRB4X5D2U9 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DRB4X5D2U9 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC18.12■□□□□ 0.49
HLA-DRB4X5D2U9 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DRB4X5D2U9 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DRB4X5D2U9 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DRB4X5D2U9 CEP120-209ENST00000515110 606 ntTSL 3 BASIC18.12■□□□□ 0.49
HLA-DRB4X5D2U9 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DRB4X5D2U9 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
HLA-DRB4X5D2U9 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC18.12■□□□□ 0.49
HLA-DRB4X5D2U9 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DRB4X5D2U9 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC18.12■□□□□ 0.49
HLA-DRB4X5D2U9 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
HLA-DRB4X5D2U9 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DRB4X5D2U9 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DRB4X5D2U9 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC18.11■□□□□ 0.49
HLA-DRB4X5D2U9 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
HLA-DRB4X5D2U9 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DRB4X5D2U9 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DRB4X5D2U9 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DRB4X5D2U9 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DRB4X5D2U9 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 1032.7 ms