Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
LRRC40Q9H9A6 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
LRRC40Q9H9A6 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
LRRC40Q9H9A6 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
LRRC40Q9H9A6 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
LRRC40Q9H9A6 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
LRRC40Q9H9A6 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC24.73■■□□□ 1.55
LRRC40Q9H9A6 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
LRRC40Q9H9A6 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
LRRC40Q9H9A6 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
LRRC40Q9H9A6 RPS2-202ENST00000526522 924 ntTSL 2 BASIC24.73■■□□□ 1.55
LRRC40Q9H9A6 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
LRRC40Q9H9A6 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.72■■□□□ 1.55
LRRC40Q9H9A6 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC24.72■■□□□ 1.55
LRRC40Q9H9A6 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC24.72■■□□□ 1.55
LRRC40Q9H9A6 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC24.72■■□□□ 1.55
LRRC40Q9H9A6 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
LRRC40Q9H9A6 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC24.71■■□□□ 1.55
LRRC40Q9H9A6 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
LRRC40Q9H9A6 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
LRRC40Q9H9A6 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
LRRC40Q9H9A6 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
LRRC40Q9H9A6 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC24.7■■□□□ 1.55
LRRC40Q9H9A6 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
LRRC40Q9H9A6 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
LRRC40Q9H9A6 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
LRRC40Q9H9A6 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
LRRC40Q9H9A6 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC24.69■■□□□ 1.54
LRRC40Q9H9A6 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC24.69■■□□□ 1.54
LRRC40Q9H9A6 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
LRRC40Q9H9A6 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
LRRC40Q9H9A6 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
LRRC40Q9H9A6 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
LRRC40Q9H9A6 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
LRRC40Q9H9A6 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
LRRC40Q9H9A6 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC24.68■■□□□ 1.54
LRRC40Q9H9A6 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC24.68■■□□□ 1.54
LRRC40Q9H9A6 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
LRRC40Q9H9A6 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
LRRC40Q9H9A6 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
LRRC40Q9H9A6 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
LRRC40Q9H9A6 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC24.67■■□□□ 1.54
LRRC40Q9H9A6 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC24.66■■□□□ 1.54
LRRC40Q9H9A6 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
LRRC40Q9H9A6 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
LRRC40Q9H9A6 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
LRRC40Q9H9A6 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC24.65■■□□□ 1.54
LRRC40Q9H9A6 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC24.65■■□□□ 1.54
LRRC40Q9H9A6 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
LRRC40Q9H9A6 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC24.65■■□□□ 1.54
LRRC40Q9H9A6 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
LRRC40Q9H9A6 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
LRRC40Q9H9A6 AC010501.1-201ENST00000606270 1962 ntBASIC24.64■■□□□ 1.54
LRRC40Q9H9A6 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
LRRC40Q9H9A6 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
LRRC40Q9H9A6 TPT1-202ENST00000379055 948 ntTSL 2 BASIC24.64■■□□□ 1.54
LRRC40Q9H9A6 AC060814.1-201ENST00000554326 538 ntBASIC24.64■■□□□ 1.54
LRRC40Q9H9A6 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
LRRC40Q9H9A6 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC24.64■■□□□ 1.53
LRRC40Q9H9A6 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
LRRC40Q9H9A6 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC24.63■■□□□ 1.53
LRRC40Q9H9A6 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC24.63■■□□□ 1.53
LRRC40Q9H9A6 ERN1-208ENST00000606895 2068 ntBASIC24.63■■□□□ 1.53
LRRC40Q9H9A6 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC24.63■■□□□ 1.53
LRRC40Q9H9A6 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC24.63■■□□□ 1.53
LRRC40Q9H9A6 AL157400.5-201ENST00000507624 621 ntBASIC24.62■■□□□ 1.53
LRRC40Q9H9A6 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
LRRC40Q9H9A6 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
LRRC40Q9H9A6 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
LRRC40Q9H9A6 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC24.61■■□□□ 1.53
LRRC40Q9H9A6 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
LRRC40Q9H9A6 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
LRRC40Q9H9A6 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
LRRC40Q9H9A6 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
LRRC40Q9H9A6 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
LRRC40Q9H9A6 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
LRRC40Q9H9A6 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
LRRC40Q9H9A6 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
LRRC40Q9H9A6 SRP68-213ENST00000629930 165 ntTSL 5 BASIC24.6■■□□□ 1.53
LRRC40Q9H9A6 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.53
LRRC40Q9H9A6 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
LRRC40Q9H9A6 AC020928.2-201ENST00000588717 2197 ntBASIC24.6■■□□□ 1.53
LRRC40Q9H9A6 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC24.59■■□□□ 1.53
LRRC40Q9H9A6 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
LRRC40Q9H9A6 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
LRRC40Q9H9A6 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
LRRC40Q9H9A6 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
LRRC40Q9H9A6 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC24.59■■□□□ 1.53
LRRC40Q9H9A6 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC24.58■■□□□ 1.53
LRRC40Q9H9A6 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
LRRC40Q9H9A6 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
LRRC40Q9H9A6 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
LRRC40Q9H9A6 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC24.58■■□□□ 1.53
LRRC40Q9H9A6 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
LRRC40Q9H9A6 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
LRRC40Q9H9A6 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC24.57■■□□□ 1.52
LRRC40Q9H9A6 MOB2-207ENST00000614710 705 ntTSL 5 BASIC24.57■■□□□ 1.52
LRRC40Q9H9A6 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
LRRC40Q9H9A6 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
LRRC40Q9H9A6 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms