Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CKS2P33552 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CKS2P33552 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CKS2P33552 TMEM202-AS1-202ENST00000565181 2325 ntBASIC17.78■□□□□ 0.44
CKS2P33552 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CKS2P33552 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC17.78■□□□□ 0.44
CKS2P33552 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC17.78■□□□□ 0.44
CKS2P33552 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CKS2P33552 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CKS2P33552 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CKS2P33552 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CKS2P33552 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CKS2P33552 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CKS2P33552 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CKS2P33552 WHAMMP2-203ENST00000563942 1603 ntBASIC17.78■□□□□ 0.44
CKS2P33552 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC17.78■□□□□ 0.44
CKS2P33552 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CKS2P33552 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CKS2P33552 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CKS2P33552 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC17.77■□□□□ 0.44
CKS2P33552 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CKS2P33552 PREB-202ENST00000406567 1910 ntTSL 5 BASIC17.77■□□□□ 0.44
CKS2P33552 EBPL-202ENST00000378268 680 ntTSL 3 BASIC17.77■□□□□ 0.44
CKS2P33552 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC17.77■□□□□ 0.44
CKS2P33552 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC17.77■□□□□ 0.44
CKS2P33552 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CKS2P33552 AL139125.2-201ENST00000623134 1869 ntBASIC17.76■□□□□ 0.43
CKS2P33552 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CKS2P33552 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CKS2P33552 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CKS2P33552 AC010501.1-201ENST00000606270 1962 ntBASIC17.76■□□□□ 0.43
CKS2P33552 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CKS2P33552 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CKS2P33552 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CKS2P33552 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CKS2P33552 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC17.75■□□□□ 0.43
CKS2P33552 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CKS2P33552 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CKS2P33552 AC022211.4-201ENST00000625094 2161 ntBASIC17.74■□□□□ 0.43
CKS2P33552 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CKS2P33552 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CKS2P33552 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CKS2P33552 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CKS2P33552 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CKS2P33552 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CKS2P33552 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CKS2P33552 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CKS2P33552 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
CKS2P33552 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC17.74■□□□□ 0.43
CKS2P33552 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC17.73■□□□□ 0.43
CKS2P33552 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CKS2P33552 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CKS2P33552 AC138932.3-201ENST00000567634 1902 ntBASIC17.73■□□□□ 0.43
CKS2P33552 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC17.73■□□□□ 0.43
CKS2P33552 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC17.73■□□□□ 0.43
CKS2P33552 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CKS2P33552 AC133561.1-201ENST00000568600 2415 ntBASIC17.73■□□□□ 0.43
CKS2P33552 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CKS2P33552 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CKS2P33552 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CKS2P33552 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CKS2P33552 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC17.72■□□□□ 0.43
CKS2P33552 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CKS2P33552 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CKS2P33552 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CKS2P33552 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CKS2P33552 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC17.72■□□□□ 0.43
CKS2P33552 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CKS2P33552 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC17.71■□□□□ 0.43
CKS2P33552 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CKS2P33552 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CKS2P33552 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC17.71■□□□□ 0.43
CKS2P33552 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CKS2P33552 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CKS2P33552 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CKS2P33552 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CKS2P33552 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CKS2P33552 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CKS2P33552 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
CKS2P33552 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CKS2P33552 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CKS2P33552 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC17.7■□□□□ 0.42
CKS2P33552 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC17.7■□□□□ 0.42
CKS2P33552 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CKS2P33552 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CKS2P33552 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CKS2P33552 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC17.7■□□□□ 0.42
CKS2P33552 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CKS2P33552 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CKS2P33552 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CKS2P33552 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CKS2P33552 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC17.69■□□□□ 0.42
CKS2P33552 SETD8P1-201ENST00000623146 1180 ntBASIC17.69■□□□□ 0.42
CKS2P33552 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CKS2P33552 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CKS2P33552 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CKS2P33552 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CKS2P33552 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CKS2P33552 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CKS2P33552 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 132.2 ms